Cobetia amphilecti: LCW13_03545
Help
Entry
LCW13_03545 CDS
T07922
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
camh
Cobetia amphilecti
Pathway
camh02020
Two-component system
camh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
camh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LCW13_03545
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LCW13_03545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
camh03021
]
LCW13_03545
Transcription machinery [BR:
camh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LCW13_03545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Serglycin
Motif
Other DBs
NCBI-ProteinID:
UBU49349
LinkDB
All DBs
Position
complement(837809..839257)
Genome browser
AA seq
482 aa
AA seq
DB search
MKPTLQLRLGTSLTMTPQLQQAIQLLQLSTLDLRQEIQQALESNPMLELDEDYESLDVVE
TQDSSEISTADSSSEIPEEYPLDSDWSDLYQDHAGSLTSSGSGSGSEEGPDFDRNTSVES
LQDHLRWQLAMTDLDGRERQMAESLIDAVDGAGYLSLSLDELVDGLRGQGLPGLKASELE
QVLLRLQQFDPTGVFARDLRECLLLQLALLPDDLPLLAQARRLVRQFLEALGNDDRKLLK
RRLSLDDDELDHVIRLVRALDPRPASAWGEPASDYVIPDLLVRHTRHGWQVELNPEALPK
LRIQPEYAALIKRADKSADNTFLKDNLQEARWLMKSLSSRNDTLLKVGREIMTRQIDFLE
QGEEGMKPLILANIAEVVEMHESTISRVTTQKYIHTPRGVFELKFFFSSQVGGSGSGDAH
SSTAIRARIRKLIAEEPARKPLSDSRLVDLLASDGIEVARRTVAKYREAMGIPSSSERKR
LA
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccaccctgcaactccgcctcggcacctcgctgaccatgacgccgcagctccag
caagcgatccagctgctgcagctgtcgacgctcgacctgcgtcaggagattcagcaagcc
ctcgagtccaaccccatgttggagctcgacgaggactacgagtcgctggatgtcgtcgag
acacaggattcgagcgagatctccactgccgactcctcgagcgagattcccgaggaatac
cccctcgacagtgactggtcggacctctaccaggaccacgccggtagcctgaccagctcc
ggcagtggcagcgggagtgaagaagggccggacttcgatcgcaataccagcgtcgagagc
ctgcaggaccacctgcgctggcagctggcgatgaccgacctcgatggccgtgaacgccag
atggcggagagcctgatcgatgccgtcgacggagcaggctacttgagcctgtcactcgac
gagctggtcgatggcctgcgcggccagggcctgcccggcctcaaggcctccgagctcgag
caggtattgctgcgtctgcagcagttcgacccgaccggcgtcttcgctcgtgatctgcgc
gaatgcctgctgctgcaactggcactgctgccggatgatctgccgctgctggcgcaggcg
cgccgcctggtacgtcaattcctcgaggcactgggcaacgatgaccgcaagctgctcaag
cgccgcctgagccttgacgatgacgagctggatcacgtcatccgcctggtgcgcgcgctc
gatccgcgtccggcatccgcctggggcgagcccgccagcgattacgtgatccctgatctg
ctggtacgccatacacgccacggctggcaggtcgagctcaacccggaagcgctacccaag
ctgcgcatccagccggaatacgccgccctgatcaagcgtgccgacaagtccgccgacaac
accttcctcaaggacaacctgcaggaagcgcgctggctgatgaagagcctgtcatcgcgc
aatgacaccctgctcaaggtcggccgcgagatcatgacgcgccagatcgacttcctcgaa
caaggcgaggaaggcatgaagccgctgattctggccaacatcgccgaagtggtcgagatg
cacgaatcgaccatctcgcgggtcacgacccagaagtacatccacaccccgcgcggcgtc
ttcgagctcaagttcttcttctcgagccaggtcggtggcagcggcagtggcgacgcccac
tcaagcaccgccattcgtgcccgcatccgcaagctgatcgcggaagagccggcccgcaag
cctctctccgactcgcggctggtcgatctgctcgccagcgatggcatcgaggtcgcacgc
cgtaccgtggccaagtatcgcgaagcgatgggcatcccctcctccagcgagcgcaagcgt
ctggcctga
DBGET
integrated database retrieval system
