Cobetia amphilecti: LCW13_04395
Help
Entry
LCW13_04395 CDS
T07922
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
camh
Cobetia amphilecti
Pathway
camh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
camh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LCW13_04395 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
camh03400
]
LCW13_04395 (mfd)
Enzymes [BR:
camh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCW13_04395 (mfd)
DNA repair and recombination proteins [BR:
camh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LCW13_04395 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_30
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UBU49504
LinkDB
All DBs
Position
complement(1025616..1029143)
Genome browser
AA seq
1175 aa
AA seq
DB search
MFETPLTPPLPRSRRETTFWMLNDPSAAALALARLADADEAPLMVITPDTASAQRLEADL
RFYTRHPERLLPFPDWETLPYDSFSPHQDIVSERLRTLRTLQTSRRAIVPVPVNTLMQRL
APVDYIAGQVFSLAKGDILNREDFRSRLSRAGYRAVETVYEPGEYALRGALIDLFPMGSE
QPLRIDLFDDEIDTLRAFDPDTQRSGDKVEAIEILPAHEYPLTRGAIACFREGFETLFDV
DPRQCILYNDAIKGIPSPGLEQYLPLFFDETATLFDHMGDELRIAMLPGVREAAESHWDA
ITTRYANLGVDPTRPLLPPHRAFVPVNELLGLIKQHERIELVREPNAHAIEFGHQPLPSL
AIDARSADPTQALASFLKQRLNGEHAQRVLFVAETQGRREVVEEQLTPLLRGFGLRSLDD
FASFEHFVDSPAAAGLTVGGLTHGTWVASAQAEDALSSDDSDSHKGLVVITETELYGEVV
RQSRRQARATDDNELAVRHLSELREGAPVVHHTHGVGRYLGLETINAGGQEAEFLALEYA
DGAKLYVPVDSLHLISRYSGASDELAPLHKLGSEQWEKAKRKAAEKIRDTAAELLDVYAR
REARVGHACDFPAEDYARFAASFPFEETPDQAQTIGAVIQDMCAPQPMDRVVCGDVGFGK
TEVAMRAAFLAVNSGRQVVVLVPTTLLAQQHYDNFRDRFADTAVEIALLSRFTSGKGQEA
SLERIRNGQADIVIGTHKLLSKSLELPNMGLLIIDEEHRFGVSQKERLKSLRAEVDILTL
TATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRNDGVVKEAILRELLRGGQVYV
LHNEVKTIEESAARIAELVPEANVGVAHGQLPERSLERRMSDFYHKRFNVLVCSTIIETG
IDIPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTRDAVKRLEAIS
ESQDLGAGFTLASHDMEIRGAGELLGDEQSGQMETIGYSLYMEMLDRAVKAIKAGKTPNI
ESPLDEGVEVSLNLPALIPADYLHDVQQRLMMYKRISNAENASDLRELQVEMIDRFGLLP
EPVKTLFRQTQLRQRAQALGIIKLEAGAGRGRIIFGAQTPVDPLTLVNLIQRQSDVYKLE
GADTLRFATDMDDAEARFSFCETLLDLLNAKTKAA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagactccgctgacgcccccgttgccgcgctcgcgccgcgaaaccaccttctgg
atgctcaatgaccccagcgccgcggcgctggcgctggcgcgactggccgatgccgatgaa
gcgccgctgatggtcatcaccccggacaccgccagcgcccagcgcctggaagccgacctg
cgcttctatacgcgccaccccgagcgcctgctgcccttccccgattgggaaacgctgccc
tacgacagcttctcgccgcaccaggacatcgtctcggagcgtctgcgcaccctgcgcacc
ctgcagaccagccgccgcgccatcgtgccggtgccggtcaacaccctgatgcagcgcctc
gcgccggtggattacatcgcaggccaggtcttcagtctcgccaagggcgacatcctcaat
cgcgaggacttccgctcacgcctgtcgcgcgccggttaccgcgcagtggagacggtctac
gagccgggcgaatacgcgctgcgcggcgcgttgatcgacctgttccccatgggcagcgag
cagccgctgcgcatcgacctgttcgatgatgagatcgacaccctgcgtgccttcgaccct
gacacccagcgcagtggcgacaaggtcgaggcgatcgagattctgcccgcgcatgaatac
ccgctgacgcgcggcgccatcgcctgcttccgcgagggcttcgagacgctgttcgacgtc
gacccgcgccagtgcattctctacaacgacgccatcaagggcattccctcgccggggctc
gagcagtatctgccgctgttcttcgacgagaccgcgacgctgttcgaccacatgggcgac
gagctgcgcatcgccatgctgcccggcgtgcgcgaagcggccgagagccactgggacgcc
atcaccacccgctacgccaatctgggcgtcgacccgacacgcccgctgctgccaccacac
cgcgccttcgtgccggtcaatgagctgctgggcctgatcaagcagcacgagcgcatcgag
ctggtacgtgagcccaatgcccacgccatcgaattcggccaccagcccctgccgagcctg
gccatcgatgcacgcagcgccgacccgacccaggccctggccagcttcctcaagcagcgc
ctgaacggcgagcatgcccagcgcgtgctgttcgtcgccgagacccagggccgccgcgaa
gtcgtcgaggagcagctcaccccgctgctgcgcggcttcgggctgcgtagtctggatgac
ttcgcaagcttcgaacacttcgtggatagcccagccgccgccggcctgaccgtcggtggc
ctgacgcatggcacctgggtggccagcgcgcaggcagaagatgccctgtccagcgatgac
agcgacagccacaaggggctggtggtcatcaccgagaccgagctctacggcgaagtggta
cgtcagagccgccgccaggcgcgcgccaccgatgacaacgagctggccgtgcgtcacctc
tcggagctgcgtgaaggtgcgccggtggtgcaccacacccacggcgtcggccgctatctg
gggctggagaccatcaacgccggtggccaggaggccgagttcctcgcgctcgaatacgcc
gatggcgccaagctctacgtgccggtggacagcctgcatctgatctcgcgctattccggg
gccagtgacgagctggcgccgctgcacaagctgggctccgagcaatgggagaaggccaag
cgcaaggcggccgagaagatccgcgataccgccgccgagctgctggatgtctatgcacgc
cgcgaggcgcgtgtcggccatgcctgtgacttccccgccgaggactacgcacgcttcgcg
gccagtttccccttcgaggaaaccccggaccaggcgcagaccatcggcgcggtgatccag
gacatgtgcgcgccccagccgatggaccgcgtggtatgtggcgatgtcggcttcggcaag
acggaagtcgcgatgcgcgccgccttcctcgccgtcaactccggccgtcaggtggtggtg
ctggtgcccaccaccctgctcgcccagcagcactacgacaacttccgcgatcgcttcgcc
gacaccgcggtggagatcgccctgctgtcgcgcttcaccagcggcaagggccaggaagcc
tcgctcgagcgcatcaggaacggccaggccgatatcgtgatcggcactcacaagctgctc
tccaaatcgctggagctgcccaacatggggctgctgatcatcgatgaggagcaccgcttc
ggcgtctcccagaaggagcgtctcaagagcctgcgcgccgaggtcgacatcctgaccctg
accgccacgccgattccgcgcacgctgaacatggcgatgagcggcatccgcgacctgtcc
atcatcgccacgccgccggcgcgccgcctgtcggtgaagaccttcgtccagcagcgcaac
gacggcgtggtcaaggaagccatcctgcgcgagctgctgcgcggcgggcaggtctacgtg
ctgcacaatgaggtcaagaccatcgaggagagcgccgcgcgcatcgcggagctggtgccg
gaggccaatgtcggcgtcgcccacggccagctgccggaacgcagcctggagcggcgcatg
tcggacttctatcacaagcgcttcaacgtgctggtgtgctcgaccatcatcgagaccggc
atcgacatcccgagcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcc
cagctgcaccagctgcgtggccgcgtcgggcgctcgcatcaccaggcctacgcctacctg
ctgaccccgcaccccaaggcgatgacccgcgatgcggtcaagcgtctggaggcgatcagc
gaatcccaggacctcggtgccggcttcacgctggcctcccatgacatggagatccgcggc
gcgggtgagctgttgggtgacgagcagtccggccagatggaaaccatcggctactcgctg
tacatggagatgctcgatcgcgccgtgaaggccatcaaggcgggcaagacgcccaatatc
gagtcgccgctggatgaaggcgtcgaggtcagcctgaatctgccggcactgattccggcc
gattatctgcacgacgtccagcaacgcctgatgatgtacaagcgcatcagcaacgccgag
aacgcaagcgacctgcgcgaactgcaggtcgagatgatcgaccgcttcggcctgctgccg
gaaccggtcaagacgctgttccgccagacccagctgcgccagcgcgcccaggcattgggc
atcatcaagctggaggccggcgccggacgtggtcgcatcatcttcggcgcccagacgcca
gtcgatccgctgacgctggtcaacctgatccagcgccagtcggatgtctacaagctggaa
ggcgccgacacgctgcgcttcgccaccgacatggatgacgccgaggcgcgcttcagcttc
tgcgagaccctgctggacctgctcaacgccaagaccaaggcggcctga
DBGET
integrated database retrieval system
