Cobetia amphilecti: LCW13_04780
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Entry
LCW13_04780 CDS
T07922
Name
(GenBank) RsmD family RNA methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
camh
Cobetia amphilecti
Brite
KEGG Orthology (KO) [BR:
camh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
camh03009
]
LCW13_04780
Enzymes [BR:
camh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LCW13_04780
Ribosome biogenesis [BR:
camh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LCW13_04780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_25
TRAM
Methyltransf_31
Methyltrans_SAM
MTS
PrmA
TRM5-TYW2_MTfase
Methyltransf_11
DREV
DNA_methylase
Motif
Other DBs
NCBI-ProteinID:
UBU49578
LinkDB
All DBs
Position
1117461..1118864
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AA seq
467 aa
AA seq
DB search
MALLGQKRPARKPTRREKEVASRGTRNASDADSQWLTVDRLAHDGRGIAHDESGKTQFID
QALPGERVTLAIHRTHKRFNEAHVRARDNAADSRVTPPCAYFGSCGGCDLQHMALDAQRT
HKVQVLGEHATRNGVTLPEIQPLGDDESRYRRRARIGVRVTDAGELQFGFRGRGSNQLVD
ITTCSVLVPELDRLLAPLRELIESLEAPKRLGHLELTAAEGQVIVVVRQLKAVPRDAQRW
QAFAEQHGLVVGWRVGRDPVVLEWLSGTPNAAYSLSVGATTLRLAFSPGDFVQVNAALNQ
RLIDTAFEWLSDVSGLKVMDLYAGVGNLTLAAAAAGASEVTGIEGSQGMVDQLMVNAEAN
GLAQVSARRADLSKALPSLEGIDLLVLDPPRDGAQPLCEELARDLHAGRVSRVPQRVLYI
ACDPTTLMRDARLLQDAGYRVTRALMADMFVHTAHLESMLLLERAED
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgctcggacagaagcgaccggcgcgcaagccgacccgtcgcgagaaggaagtg
gccagtcgtggcacccgcaatgccagcgacgccgacagccagtggctgacggtcgaccgc
ctggcccatgacgggcgcggcatcgcccatgacgagagcggcaagacccagttcatcgat
caggccctgcccggcgagcgcgtgacgctggccatccaccgcacccacaagcgcttcaat
gaggcgcatgtgcgtgcacgtgacaacgcggctgacagtcgcgtgacgccgccctgtgcc
tatttcggcagctgtggcggctgtgatctgcagcatatggcgctggatgcccaacgcacc
cataaggtgcaggtgctgggcgaacatgcgacacgcaatggcgtgacgctgcccgagatt
cagccgctgggcgatgatgaaagccgttatcgccgtcgcgcgcgtatcggcgtacgcgtg
accgatgccggagagttgcagttcggcttccggggacgcggcagcaaccagctggtcgat
atcaccacctgcagcgtgctggtgccggagctggaccgcctgctcgcgccgctgcgtgag
ctgatcgagagcctcgaggcacccaagcgtctgggtcatctggagctgaccgctgccgaa
gggcaggtcatcgtggtggtgcgccagctcaaggcggtgccgcgtgatgcgcagcgctgg
caggccttcgccgagcagcacggcctggtggtcggctggcgggtcggacgtgatccggtg
gtgctggagtggctgtcgggcacgccgaacgccgcgtattcgctgagtgtcggcgcaacg
acgctgcgtcttgccttctcgccgggcgacttcgtgcaggtcaatgcggcgctcaatcag
cgcctgatcgacaccgccttcgaatggctgagcgacgtcagtggcctcaaggtgatggac
ctctacgccggtgtcggcaacctgaccctggcggctgccgcggccggcgccagtgaggtg
acgggcatcgagggcagtcagggcatggtcgatcagctgatggtcaatgccgaagccaac
ggactggctcaggtgagtgcacgtcgagcggacctgagcaaggccctgccgtcactcgag
ggtatcgaccttctggtactagacccgccgcgtgatggcgctcagcctctctgcgaggag
ctggcacgtgatctgcatgctgggagggtcagccgagtgccgcagcgtgtgctgtacatc
gcctgtgacccgaccacgttgatgcgtgatgcacggctgttgcaggacgccggttatcgc
gtcacgcgtgccctgatggcggacatgttcgttcacacggcacatctggaatcgatgttg
ctgctggagcgggcggaagactga
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