Cobetia amphilecti: LCW13_06235
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Entry
LCW13_06235 CDS
T07922
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
camh
Cobetia amphilecti
Brite
KEGG Orthology (KO) [BR:
camh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
camh03000
]
LCW13_06235
Transcription factors [BR:
camh03000
]
Prokaryotic type
Helix-turn-helix
Other families
LCW13_06235
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
AAA_3
HTH_30
HTH_7
AAA_7
HTH_23
HTH_28
HTH_22
HTH_11
HTH_29
nSTAND6
HTH_psq
Xre-like-HTH
DUF815
Motif
Other DBs
NCBI-ProteinID:
UBU49851
LinkDB
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Position
complement(1436963..1438825)
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AA seq
620 aa
AA seq
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MATVASAVAGHTLNLLDHWQACLVLTDRDGVVLASYGHQQLLGNDAPLLHPGARWREESL
GHNAIAETLNAPRANRLARIALEAHDAECLKGLASASAALLAPASWSANRGLTPGACEGC
LGLICDPYRVRQYSLGMLGVLADDIEQRRLGEAHGHDHHLLRLHLNRSQLDSPSAALLAV
TPQGQVAAASRRGLQLLAAHLELTPASENAANATDSAANAADSDSCATRDDIHLLLGQPL
ARWQLDWAPLAQLANAQCLMLTQHPRFTGYTLCAAPPRPRVVARAPAERSASQPPAEVAT
RETACHPSLARLHHGDAGWARVCELLARLVNARLPLLLQGETGVGKEEVVKALHQASHRA
HQPLVAINCAALPDELVEAELFGYRRGAFTGADPAGREGRLLEANGGRLFLDEIGDMPLH
VQARLLRVLQEREVTPLGGGKPQRVDFELVAATHQPLSELVKAGRFRADLYYRLCGATIA
LPPLRERHDIAGLSRALLTRLCGEQQRELPRITPAFLDRLTQHDWPGNVRELDNVLRLAL
ALCDGPTLEPCHVMLAGDCHAAEGEIAHQPSQPSGLPSLHDLSSAEELQSALDALGGNVS
RLARELGISRTTLYKRLGAA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggtggcgtcagcggtggccggccataccctcaacctgctcgatcactggcag
gcgtgtctggtgctgaccgaccgcgacggcgtggtgctggcaagctacggccatcaacag
ctgctgggcaatgacgcccccctgttgcaccccggcgcgcgctggcgtgaggagtcgctg
ggtcacaacgccatcgccgagaccctgaatgcaccgcgtgccaatcgcctggcgcgcatc
gcgctcgaagcgcatgacgccgaatgcctcaaggggctggccagtgccagtgccgcgctg
ctggcacccgccagctggagtgccaatcgaggcctgacgcccggcgcctgcgaggggtgc
ctgggactgatctgcgatccctaccgtgtgcgccagtacagcctcggcatgctcggcgta
ctggcggatgacatcgagcaacgccgtctgggcgaggcgcatgggcacgaccatcacctg
ttgcgcctgcatctcaaccgctcgcagctggactcgcccagtgcggccctgctggccgtc
acgccgcaaggtcaggtcgctgccgccagtcgccggggactgcagctgctggcggctcat
cttgaactcacgcccgcttccgaaaacgcagccaacgcaacggacagcgcagccaatgca
gcggacagcgacagctgcgccacccgcgatgacatccacctgctgctgggccagccgctg
gcacgctggcagctggactgggcgccgctggcccagctcgccaatgcgcagtgcctgatg
ctcacacaacacccgcgcttcacgggctacaccctgtgtgcagccccgcccaggccacgg
gtcgtggcccgtgcgccggccgagcgctccgcaagccagccaccggccgaagtcgccact
cgagagactgcgtgccacccgagcctcgcgcgcctgcatcatggcgatgccggctgggcc
agagtctgcgaactgctggcgcggctggtgaacgcccgcctgccactactgctgcagggc
gagaccggcgtcggcaaggaggaagtggtcaaggcgctgcatcaggccagtcatcgcgcc
catcagccgctggtcgccatcaactgcgccgccttgcctgatgagctggtcgaggccgag
ctgttcggctatcggcgcggcgcctttaccggtgccgaccccgccggacgcgaaggccgc
ctgctcgaggccaatggcgggcgcctgtttctggatgagatcggcgacatgccactgcat
gtgcaggcgcgtctgctacgcgtgctgcaggagcgtgaagtcaccccgctgggcggcggc
aagccgcagcgggtcgatttcgaactggtcgccgccacccatcagcccctcagcgagctg
gtcaaggccgggcgcttccgggcggatctctactatcgcctgtgtggggccaccatcgcc
ctgccgccgctgagggagcgtcacgacatcgccggactgagtcgtgccctgctgacacgg
ctgtgcggggagcagcaacgtgagctgccgcgcatcacgcccgccttcctcgatcgcctc
acccagcatgactggcccggcaacgtgcgcgagctggacaacgtgctgcgtctggcgctg
gcactgtgcgatgggccgaccctggagccgtgccatgtgatgctggcgggcgactgccac
gcggcagagggcgagattgcccaccagccctcgcaaccgagcggcctgccctcgctgcat
gatctctccagtgccgaggagctgcagagtgcgctggacgcgctgggcggcaacgtctcg
cgtctcgcgcgggagctgggcatcagccgcaccacgctctacaagcgactcggcgcggcc
tga
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