Cobetia amphilecti: LCW13_14990
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Entry
LCW13_14990 CDS
T07922
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
camh
Cobetia amphilecti
Pathway
camh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
camh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LCW13_14990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
camh03021
]
LCW13_14990 (rpoD)
Transcription machinery [BR:
camh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LCW13_14990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UBU48296
LinkDB
All DBs
Position
complement(3598563..3600401)
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AA seq
612 aa
AA seq
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MAGNAQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIADPEQVEDIISMINDMGIKVAEE
APDADTLMMSDSSTDESAAEEAVAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIK
IAKRIEEGTREVMSSLAFLPGAVDSILEAYDGTLGEDGGRLSDLFSGFIDPDEGVPGVAE
VEVEEVEEIPEGEESEGDEDEDDDSASEGGPDPELARVRFEQIREQNEATKAAIEKYGSG
SAEAKAEQDRLAELFSPIKLVPKHFERLVGQVRVSVEQVREQEKVILQIFVKRGKVPRKS
FIKAFPGHESDMDWFDSFIGGSKKYADKLEPFRADVLRAQRKIAFEQDMVQLPVSELKEV
NRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPE
ELGERLEMPEDKVRRVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMVSPIDSATGEGLI
EATRGILSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSESLRSFMEE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggctggtaatgcgcagcagcagtcgcgtctcaaggagttgatcgcgcgcggcaaggaa
cagggttacctgacctatgccgaggtcaacgatcacctgcccgaggatatcgctgatccc
gaacaggtggaagacatcatcagcatgatcaacgatatgggcatcaaggtcgcggaagaa
gcgcccgatgccgataccttgatgatgtctgattcctccactgacgagtctgccgccgaa
gaggccgttgccgccctcgccgcggtggaaagcgatgtgggacgcaccaccgaccctgtc
cgcatgtacatgcgtgagatgggcaccgtggaactcctgacccgcgaaggcgaaatcaag
atcgccaagcggatcgaggagggcacgcgtgaggtgatgtcgtcgctggcattcttgccg
ggggcagtcgactccatcctggaagcctacgacggcactctgggcgaagacggcggacgt
ctgtccgatctcttctccggtttcatcgaccctgacgaaggcgtgccgggtgtcgctgaa
gtcgaagtcgaggaagtcgaagagatacccgagggcgaagagtccgaaggcgacgaagac
gaagacgacgattccgcctctgaaggtggcccggaccccgagctggcccgcgtccgcttc
gagcagatccgtgaacagaacgaggcgaccaaggccgccatcgagaagtacggttccggc
tctgccgaggcgaaagccgaacaggaccgtcttgccgagctgttctcgccgatcaagctg
gtgcccaagcacttcgagcgtctggtcggtcaggttcgcgtgtccgtcgagcaggtgcgc
gagcaggaaaaggtcatcctgcagatcttcgtcaagcgcggcaaggtgcctcgcaagagc
ttcatcaaggccttcccgggccacgagtccgacatggactggttcgacagcttcatcggt
ggcagcaagaagtacgccgacaagctcgagccgttccgtgccgacgtgctgcgtgcccag
cgcaagatcgccttcgagcaggacatggtccagctgccggtcagcgagctgaaggaagtg
aaccgtcgcctgtcgatcggtgaagccaaggcgcgtcgtgccaagaaggaaatggtcgag
gccaacctgcgtctggtcatctccatcgccaagaagtacaccaaccgtggtctgcagttc
ctggatctcatccaggaaggcaacatcggtctgatgaaggctgtggacaagttcgagtac
cgtcgtggttacaagttctcgacctacgccacctggtggatccgtcaggcgatcactcgc
tccatcgcggaccaggcgcgcaccatccgtattccggtgcacatgatcgagaccatcaac
aagctgaaccgtgtctcgcgtcagatgctgcaggaaatgggtcgcgagccgacgccggaa
gagttgggcgagcgtctcgagatgccggaagacaaggtgcgtcgcgtgctcaagatcgcc
aaggagcccatctccatggagacgccgatcggtgacgatgatgattcgcacctgggtgac
ttcatcgaggacggcaccatggtctcgccgatcgactccgccaccggcgaaggtctgatc
gaagcgacccgcggcatcctgtccggcctgaccgcacgtgaagccaaggtgctgcgcatg
cgcttcggtatcgacatgaacaccgaccataccctcgaggaagtcggcaagcagttcgat
gtcacccgtgagcgtatccgtcagatcgaagcgaaagcgctgcgcaagctgcgtcacccg
tcacgctccgagtcactgcgttccttcatggaagagtga
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