Campylobacter fetus subsp. testudinum 03-427: CFT03427_0727
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Entry
CFT03427_0727 CDS
T02899
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
camp
Campylobacter fetus subsp. testudinum 03-427
Pathway
camp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
camp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFT03427_0727 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
camp03400
]
CFT03427_0727 (mfd)
Enzymes [BR:
camp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFT03427_0727 (mfd)
DNA repair and recombination proteins [BR:
camp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFT03427_0727 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UvrB_inter
SNF2-rel_dom
AAA_22
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AGZ81595
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All DBs
Position
742261..745215
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AA seq
984 aa
AA seq
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MQARIYEFFKFNKNIYDILVTNDDKEAREAYDSASYAGLTCFVLPDFRAVKGDDLRAFNT
ELLEISKVLTKFYKSDSKNKLLISPIRTLLNKLPTSSNLKTKTVSYADTLNLTEFKEEML
GFGYNFVDIVEGRGEIRISGEIIDIFSISEDKPIRILLDIDTVCSIRYFDLDTQKSDKNE
LTSVTITPFLASLNSDELKDINDKLENIDSNALIKDINSFGFWVIDGFSDYFDSFKTVLA
TQIDIDDIVSNRDLSFLNTVPILPEPKIYKDLEVSVNSDLIKFHSSKKIQILSSNESSFN
ALNLENSSNVELVISNLILNIASKDELILSLNKRVKKQRVKKASLVIDELKAGDFIVHSD
YGIGKFLGLELITVLGSKKEFVVIAYQNDDKLLLPVEHLNMIDRYIAGSGAVVSVDRLGK
ASFAKIKEKVREKLFIIASKIIALAAKRELIEGIRLNADSKYAEFKSSAGFLYTDDQEKA
VNDIQNHLNSGRVMDMLLSGDVGFGKTEVAMNAIYLCVKSGYQALFFVPTTLLSSQHYKS
LKERLGKFDIEVKRLDRFTSAKEKSLIIKDLNDAKPMVLIGTHALLSLKAVNLGLIIIDE
EHKFGVKQKEKLKEISEHSHILSMSATPIPRSLNMALSKVKSYSTLTTPPIDRMDVRTFV
KEWDEKLVKEVILREMRRGGQIFYVHNLISDIPSIEIQLKALIPNLKVLTLHSKIDTKTT
EDEMIKFANKEYDLLLCTSIIESGIHLPNANTIIIDDANKFGIADLHQLRGRVGRSNKQG
YCYFLVGDKNELSSEAVKRLIALESNSFLGSGALLAYHDLEIRGGGNLVGEAQSGHIEAI
GYTLYLKMLEDEINALLNHQTKEMTQIDIKLSVNAFLNADLINEDRIRLELYRRLSKCQN
VSEVYEIGAEIEDRFGKLDAYTKQFLDIIVIKILACEQGFKSVSNYEQNISLTKIDGTKV
ILKSRSKDDDVLAQTLVYLRKNSS
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaaggatttatgagttttttaaatttaataaaaatatatatgatatcttagta
acaaatgacgataaagaggcaagagaagcttatgatagtgcttcttacgccggacttact
tgttttgttttgccagattttagagctgtaaaaggcgatgatttaagagcttttaataca
gaacttttagaaataagtaaggttttaactaaattttataaaagtgattctaaaaataag
ctgcttatatctcctattcgtacgcttttaaacaagcttccaactagttcaaatttaaaa
accaaaactgttagttacgctgatactttgaatttaactgagtttaaagaagaaatgctt
ggttttggatataattttgtagatatcgtagagggcagaggtgagataagaataagcggc
gaaatcatcgatatatttagcatttcagaagataagccaattagaattctactagatata
gatactgtttgtagtataagatactttgatcttgacacacaaaaatcggacaaaaacgag
cttacttcagttaccataactccgtttttggcttcgctaaatagtgatgagttgaaagat
ataaatgataaattagaaaatatcgactcaaatgctttgataaaagatatcaactcattt
ggtttttgggttatagatggatttagcgattattttgatagttttaaaactgttttagca
acgcaaatagacatagatgatatagtttctaatagagatctaagttttttaaacactgtt
cctatcttaccagaaccaaaaatttataaagatttagaagttagtgtaaatagcgatcta
atcaaatttcatagcagtaaaaaaattcaaattctaagctccaacgagagtagttttaat
gctttaaatttagaaaatagttcaaatgtagagcttgtcataagcaatctgatactaaac
atagctagtaaagatgagttgatactatctttaaataaaagagttaaaaaacaaagagtc
aaaaaagcaagtttagttatagatgaattaaaagccggcgattttatcgtgcatagcgat
tatggtataggcaagtttttagggcttgagcttatcactgttttaggtagtaaaaaagag
tttgtagttatcgcttaccaaaacgatgataaacttcttttgccagtagaacatctaaat
atgatagatcgttatatagcaggaagcggcgctgtagttagcgtagataggcttggtaag
gctagtttcgcgaaaatcaaagaaaaagtcagagaaaaactatttatcatagctagtaaa
atcatagctttagctgcaaaaagagagttgatagaaggtataagattaaacgcagatagc
aagtatgctgagtttaaatccagcgcgggatttttatacacagatgatcaagaaaaagca
gtaaatgatatacaaaatcatctaaatagcggacgagttatggatatgcttttaagcggc
gatgtaggttttggtaaaactgaagttgcgatgaacgctatttacctatgtgtaaaaagc
ggttatcaggctctattttttgtacctactacattgcttagctcacagcactataaaagc
ttaaaagagcgtttgggtaaatttgatatagaagttaaaaggctagatcgttttactagc
gcaaaagaaaagtcactcattataaaagatctaaatgatgcaaaacctatggttctcatc
ggtactcacgctttgctatctttaaaagctgtaaatttagggctaatcatcatagatgaa
gagcataaattcggtgttaaacaaaaagagaaattaaaagagatcagtgagcattcacat
atactttctatgtcagcaactcctatcccaagaagtttaaatatggctttaagcaaagtt
aaaagttatagcactcttacaacgccaccgattgatagaatggatgtaaggacatttgtc
aaggagtgggatgaaaagcttgtaaaagaggttatactaagagagatgagaagaggcggg
cagatattttacgtgcataatttaatatctgatataccgagcatagaaatccaattgaaa
gctttaataccgaatttaaaagttttaactcttcatagcaagatagatacaaaaactacc
gaagatgagatgataaagtttgcaaacaaagagtatgatctgcttctttgtacaagtatc
atagaaagtggtatccacttgccaaatgctaatactattataatcgatgacgcaaataaa
tttggtatcgcggatttgcatcagctaagaggaagagttggtaggagcaataaacaaggc
tactgttactttttagtcggcgataaaaatgagcttagtagtgaagctgtaaaaagactt
atcgctcttgagagcaactcatttttgggttctggagcacttcttgcttatcatgattta
gagattagaggtggcggaaatttagtcggagaggctcaaagcggtcatatagaggcgatc
ggatatacgctttatctaaaaatgcttgaagatgagataaacgcacttttaaatcatcaa
acaaaagagatgactcaaatagatataaaacttagtgtaaatgcatttttaaatgctgat
ctcataaatgaagatagaatcaggcttgagctatataggcgtcttagcaaatgccaaaat
gtaagcgaggtttatgagataggagcagaaattgaagatagatttggcaaacttgatgct
tatactaagcaatttttagatattatagtcataaagatcttagcttgtgagcaaggattt
aaatctgtgagtaattatgagcaaaatataagcttaactaaaattgatggtacgaaagtt
attctaaagtcaaggagtaaagatgatgacgtacttgcgcaaactctggtatatttaaga
aagaattcgtcatga
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