Campylobacter fetus subsp. testudinum 03-427: CFT03427_1106
Help
Entry
CFT03427_1106 CDS
T02899
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
camp
Campylobacter fetus subsp. testudinum 03-427
Pathway
camp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
camp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFT03427_1106 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
camp03019
]
CFT03427_1106 (rnr)
03016 Transfer RNA biogenesis [BR:
camp03016
]
CFT03427_1106 (rnr)
Enzymes [BR:
camp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CFT03427_1106 (rnr)
Messenger RNA biogenesis [BR:
camp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFT03427_1106 (rnr)
Transfer RNA biogenesis [BR:
camp03016
]
Prokaryotic type
tRNA degradation factors
CFT03427_1106 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AGZ81965
LinkDB
All DBs
Position
1126055..1127983
Genome browser
AA seq
642 aa
AA seq
DB search
MKEFLNALANGVDDKFIKIDEREILRVLEQIKAVKKHKNKFYLNDGYVCGKLDISSGGTG
FLMPYDARFKQDIIIENRDLNGAHFGDIVLAKLTKSKKSRLHATMIAVLAMANETSVVYT
KKFGQVIMGVSIPNALTIALKASQKSLKELPIGTVLKINNLDNDITEVLGVLSDPSIDEK
ISLAIYNKKNLFPKICENEAKSFGDSVDKSMYPNRVDLTNLPFCTIDPVDAKDFDDAIYY
DVKNRTIYVAIADVSEYVAAYSGIDKEAKFRGFSIYFPHIAIPMLPRALSENICSLKPNC
NRLAFVFKISLDESLEPVKEELFEAVIHSKKRFNYDEVDEILALNLKADDEIQEWILPLF
ETAKKLKFKRLQNGFDFRSKELRMSISPNGDILKTAYEKETPSHSLIEDCMLLANKAAAK
KINHGIFRNHAPADLKKINTLLDDLAVLGIEATYESDLVALISKIQTQADSLNIREDVDK
LIIKAQKRAEYASKPTGHFGLGFDLYSHFTSPIRRYSDLILHRLLKANLANNAKLFNYLL
LDIEGVCRGLNELEREADRVAWDFMDRKFARWAENHIDEVFRCYISEVGNQTIAKLDDEI
KGARIYIENFTCSLLASVMVQIKEVDIPNAKIIGKVVQKLDV
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagagtttttaaacgctcttgcaaatggcgtagatgataaatttataaaaatagac
gaacgagagattctgcgagtactcgagcagataaaagctgttaaaaagcataaaaacaaa
ttctacttaaacgatggatacgtctgcggtaagcttgatataagcagtgggggtacggga
tttttgatgccgtatgatgcgcgtttcaagcaagatataataatagaaaatcgagattta
aacggtgctcattttggtgatatagtattagcaaaattaacaaaatctaaaaaatccaga
cttcacgcaacaatgatagcagttttagctatggcaaatgagacaagcgtagtttatacc
aaaaaattcggtcaagtcataatgggagtaagtatcccaaatgctcttactatagcactt
aaagccagtcaaaaatccttaaaagaactaccgataggaactgttttaaaaatcaataat
ctagataatgatataacagaagttttaggtgtattaagcgatccatcgatagatgaaaaa
atctcattagcaatctataataaaaaaaatcttttcccaaaaatatgtgaaaacgaagca
aaaagttttggagatagcgtagataaaagtatgtatccaaatagagtggatttaacaaat
ttaccgttttgcacgatagatcctgttgatgcgaaagattttgacgatgctatttattat
gacgtgaaaaatcgaaccatatatgtagctatagccgatgttagcgaatacgtagctgct
tatagcggtatagataaagaggctaaatttagaggattttccatatattttcctcatatc
gccattcctatgttaccaagagcgcttagtgaaaatatctgctctttaaaaccaaattgc
aataggctagcttttgtatttaaaatatctttagatgagagtttagaacctgtgaaagag
gagctttttgaagctgttattcactctaaaaaacgatttaactatgatgaagtagatgaa
attttggctttaaatttaaaagcggacgatgagatacaagagtggattttgccactattt
gagactgctaaaaagcttaaatttaaaagattgcaaaatggatttgactttagaagcaaa
gaacttagaatgagcatttctccaaatggagatatcttgaaaacagcgtatgaaaaagag
actccttctcactctcttatagaagattgtatgcttttagcaaataaagccgccgcaaaa
aaaataaatcacggtatatttagaaaccacgctccagccgatcttaaaaagataaacacg
cttttagacgatctagcagttcttggcatagaagctacttatgaaagcgatctagtagca
ctaatatccaaaatccaaactcaagcagatagtttaaatatcagagaagacgtcgataaa
ctcatcataaaagcacaaaaaagagcagaatacgcaagcaagccaactggacattttggt
ttaggatttgatctgtattctcattttacaagtccgattaggcgttattctgatcttatt
ttacatagacttttaaaagcaaatttagcaaataacgcaaaacttttcaactatcttctt
ttggatatagaaggagtttgtagggggctaaacgaacttgaacgcgaagctgatagagta
gcgtgggattttatggatagaaaatttgcaagatgggctgaaaatcatatcgatgaagta
tttcgctgctatataagtgaagttggcaaccaaacaatagctaaattagacgacgaaatc
aaaggagcgagaatatacatagaaaactttacttgctcacttcttgcttctgttatggtg
cagataaaagaagtcgatataccaaacgcaaaaatcataggaaaagtagtacaaaaacta
gatgtataa
DBGET
integrated database retrieval system
