Campylobacter sp. RM16704: CAQ16704_0466
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Entry
CAQ16704_0466 CDS
T03560
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
camr
Campylobacter sp. RM16704
Pathway
camr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
camr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAQ16704_0466 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
camr03021
]
CAQ16704_0466 (rpoC)
03400 DNA repair and recombination proteins [BR:
camr03400
]
CAQ16704_0466 (rpoC)
Enzymes [BR:
camr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAQ16704_0466 (rpoC)
Transcription machinery [BR:
camr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAQ16704_0466 (rpoC)
DNA repair and recombination proteins [BR:
camr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAQ16704_0466 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF7660
Motif
Other DBs
NCBI-ProteinID:
AJC85966
LinkDB
All DBs
Position
435738..440291
Genome browser
AA seq
1517 aa
AA seq
DB search
MSKFKPIEIKEDGRPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRFKGIKCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAYYDNENTKKVEFCDVLNEEQYLNLMQR
YESSGFKARMGGEVVRDLLANLDLVELLNQLKEDILATNSEAKKKTIIKRLKVVENFLNS
NLNTNTNSDEVVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKRLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKILMLSSMNILLPASGRSVTVPSQDMVLGIYYLSLEKD
GAKGEHKICTGIEEVMIALEAKSLDIHASIRSVIDGRKITTTAGRLIIKSILPDFVPENM
WNKVMKKKDIAALVDFIYKEGGLEISASFLDKLKDLGFEYATKAGISISIADIIVPNKKQ
KNIDEAKKQVREIQNSYNLGLITSGERYNKIIDIWKSTNNILSKDMMDLIKKDKDGFNSI
YMMADSGARGSAAQISQLAAMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKVTIEDCGAHEGVEINEITADGIVIETLEERILGR
VLAENIIDSITNEILFSEGTLIDEEKARIVVESGIKSVSIRTPITCKAKKGVCSKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVVAHKEGFVRFYN
LNTYKDREGKTIVANHRNAAILLVEPKIKAPFKGVVHIEHAYEDVVVSVKAKNNEAKFIL
RKYDLAKANELAGVSGNIEGKLYIPYNDGDEVAENESIVEVIKEGWNIPNRIPYASELLV
KDGDPITQDIVAGAKGTLKFYMLKGDGLDRIRKLKKGDIVKEKGVFVVIADENDREAKRH
YIPRESVIEFNDSTFIDDPKTVIAKSSKEDKTIIAEWDAYNNTVIAEIAGTINFEDIESG
YSADEQIDEATGKRSLVINEYLPSGVRPTLLIIGENDKVLRYQLEPKTVIYVNDGDKVKQ
ADILAKTPKAATKSKDITGGLPRVSELFEARKPKNTAVVAEIDGVVRFDKPLRSKERIII
QAEDGSSAEYLIDKSKRIQVRDGEFIHAGEKLTDGIISSHDVLRILGEKALHYYLISEIQ
QVYRGQGVVISDKHIEIIVSQMLRQVKIVDSGNTNFIVGDLVSRRKFREENERILKHGGE
PAVAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIP
VGTGLYGDQNLKLKQQN
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatttaaacctatcgaaataaaagaagatggcagacctagagactttgaagct
tttcaattaagacttgcaagtcctgaaaaaatcaaatcatggtcttatggggaagtaaaa
aaacctgaaacaattaattatagaactttaaagcctgaaagagatggacttttttgcgct
aaaatttttggaccggtaagagattatgagtgtctttgtggtaagtataagaaaatgcgt
tttaaaggcattaagtgcgaaaaatgtggcgttgaagttactagttctaaagtacgccgt
tcaagaatggggcatattgaattagttacaccagttgctcatatttggtatgtaaattct
ttgccaagtcgtatcggtactttgcttggtgtaaaaatgaaagatctagaacgtgtgttg
tattatgaagcatatatagtagaaaatccaggtgatgcatactatgataatgaaaatact
aaaaaagttgaattttgtgatgtattaaatgaagagcagtatttaaatttaatgcagcgt
tatgaaagcagtggttttaaagctagaatgggtggagaagttgttagagatttgttagca
aatttagatcttgttgagcttttaaatcaattaaaagaagatattttagcaactaattct
gaagctaagaaaaagacaatcattaaacgtttaaaagtagtagaaaattttctaaatagc
aatttaaatactaatacaaatagtgatgaagttgttccaaatcgtcctgaatggatgatg
attacgaatttacctgtattgccacctgatttaagacctttagttgctctagatggtgga
aaatttgcagtttctgatgtaaatgatttatatagaagagttattaatagaaatacacgt
ttaaaaagactaatggaacttgatgcacctgaaattattataagaaatgaaaaaagaatg
cttcaagaggctgttgatgcattatttgataatggtagaagagcaaatgctgttaagggt
gcaaacaaacgaccattaaaatctttaagtgaaattattaaaggtaagcaaggtcgtttt
agacaaaatctacttggtaaaagggtggatttttcaggtcgtagcgttattgttgttggt
ccaaaacttaggatggatcagtgcggattacctaaaaaaatggctttagaattatttaaa
ccacatttattagccaagcttgaagaaaaaggttatgctacaacagttaagcaagctaaa
aaaatgatagaaaataaaacaaatgaagtttgggagtgtttggaagaggttgttaaaggt
catcctgtaatgcttaatcgtgcaccaactttacataaactttccatacaagcatttcat
cctgtacttgtagaaggtaaggctatacaacttcatcctttagtttgtgctgcatttaat
gctgactttgatggagaccaaatggctgtacatgtgcctttatcacaagaagcaattgct
gaatgtaaaatattaatgctatcatctatgaatatcttacttcctgcaagtggtcgttca
gtaactgttccatctcaagatatggttttaggaatttattatttatctttggaaaaagat
ggtgctaaaggtgaacataagatttgtacgggtattgaggaagttatgattgctttagaa
gcaaaatctttagatattcatgcaagcattagaagtgtaattgatggtagaaaaattaca
acgactgctggtagattgattattaaatctatactacctgattttgttccagaaaatatg
tggaacaaagtaatgaagaaaaaagatatagccgctttagttgattttatatacaaagaa
ggtggtctagagataagtgctagctttttagataaacttaaagatcttggttttgagtat
gcgacaaaggctggaatttcaatttcaattgcagatattatagttccaaataaaaaacaa
aaaaatattgatgaagcaaaaaaacaagtcagagaaattcaaaattcatataatttaggt
ttgattacttcaggcgaaagatacaataaaatcattgatatttggaaaagtactaacaat
attttatcaaaagatatgatggatttgattaaaaaagataaagatggatttaactccatt
tatatgatggcagattctggtgctagaggttcagctgctcaaatttctcagcttgctgct
atgagaggacttatggctaaacctgatggttctattattgaaacaccaattatttcaaac
ttccgtgaaggacttaatgttcttgagtatttcatttcaactcacggtgctagaaaaggt
cttgcagatactgcgttaaaaacagcaaatgcaggttatttgacaagaaagcttattgat
gttgctcaaaatgttaaagtaactatagaagattgtggagcacatgagggtgttgaaatt
aatgagattacagcagatggtattgtaattgaaactttagaagaaagaattttaggaaga
gttttagcggaaaatattatagattccattacaaatgaaattttattttcagaaggaact
ttaatagatgaagaaaaagctagaattgttgttgaaagcggaataaaaagcgtaagtatt
aggacccctattacgtgtaaagctaaaaaaggtgtatgttctaaatgctatggtattaac
ttaggtgagggtaaattagttaaaccaggagaagctgttggtattatttcagctcaatca
attggtgaaccaggaacccaacttacacttaggacattccatagtggtggtacagcaagc
acagatttacaagatcgtcaagtagtagctcataaagaaggttttgtaagattttataat
cttaatacatataaagacagagaaggcaagactattgttgctaatcatcgcaatgctgct
attttacttgttgagccaaaaattaaagctccatttaagggcgtagtccatattgagcat
gcatatgaagatgtggtagtaagcgtaaaagctaaaaataatgaagctaaatttatacta
agaaaatatgacttagcaaaagcaaatgaacttgctggggtaagtggtaatatcgaaggt
aaattatatattccatataatgatggtgatgaagtagctgaaaatgaaagtatagtagaa
gttatcaaagaaggttggaatataccaaaccgtattccttatgcaagtgaattgttagta
aaagatggagatccaattactcaagatattgtagctggtgcaaaaggtactttgaaattt
tatatgcttaaaggcgatggtttagatagaattagaaaattaaaaaaaggcgatatagtt
aaagaaaaaggtgtgtttgttgtaattgcagatgaaaatgatagagaagcaaaaagacac
tatattccaagagaatctgtgattgaatttaacgatagtacttttatagatgatcctaaa
accgtgattgcaaaatcaagtaaagaagataaaacaattattgctgaatgggatgcatat
aacaatactgtaattgcagaaattgcaggaactattaattttgaagatattgaatcaggt
tatagtgctgatgagcaaattgatgaagcaacaggaaaaagatcacttgtaattaatgaa
tatttaccaagtggagtgcgacctaccttattaattataggtgaaaacgataaggtttta
cgttatcaattagaacctaaaactgttatttatgtaaatgatggtgataaagttaagcaa
gcagatattttagctaaaacaccaaaagcagcaactaaatcaaaagatattaccggaggt
cttccaagggtttctgaattatttgaagcaagaaaaccaaaaaatactgctgtagtagca
gaaattgatggagttgtaagatttgataaacctttgagatcaaaagaaagaatcatcatt
caagccgaagatggaagtagtgcagagtatttaatagataaatcaaaacgtattcaagta
agagatggagaatttatccatgcaggagaaaaattaaccgatggaattatctcaagtcat
gatgttttaagaattttaggtgaaaaagcattacattattatcttatttctgaaattcag
caagtttatcgtgggcaaggtgttgtgatttctgataaacatattgaaattattgtatca
caaatgttaagacaagttaaaatagtagatagcggtaacactaattttattgtaggtgat
ttggtttcaagaagaaaattcagagaagaaaatgagagaattttaaaacatgggggagaa
cctgcagtagctgaaccagtattactaggagtaacaagggcagctatcggaagtgatagt
gtgatttcagctgcatcattccaagaaacaactaaggttttaacagaagcaagtattgca
ggtaaatttgattatcttgaagatctaaaagaaaatgtaattttaggtcgtatgattcct
gttggtacaggtctttatggagatcaaaatttaaaacttaaacaacaaaattaa
DBGET
integrated database retrieval system
