Campylobacter sp. RM16704: CAQ16704_0938
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Entry
CAQ16704_0938 CDS
T03560
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
camr
Campylobacter sp. RM16704
Pathway
camr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
camr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAQ16704_0938 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
camr03019
]
CAQ16704_0938 (rnr)
03016 Transfer RNA biogenesis [BR:
camr03016
]
CAQ16704_0938 (rnr)
Enzymes [BR:
camr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CAQ16704_0938 (rnr)
Messenger RNA biogenesis [BR:
camr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAQ16704_0938 (rnr)
Transfer RNA biogenesis [BR:
camr03016
]
Prokaryotic type
tRNA degradation factors
CAQ16704_0938 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AJC86395
LinkDB
All DBs
Position
910221..912161
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AA seq
646 aa
AA seq
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MKELFNQLSYGLNANEITNKNKQIIRELLTCDIVKFYKNKYYLKDGFTFGKIDISSNGTG
FLESFDHTLKRDLLIENKNLKGANYADIVVAKLLPLKKKRPNAKVILILKRAHETSLVIT
KKYGEVVLGVNIQTGLTCALKASQKSLKALPLGTILKIENHDNNITEVIGHIDDEFVDEK
ISLALFNKNAVFDTLCENEARAYGNEVDASMYPSRKDIRNLNFCTIDPVDAKDFDDAIYY
DKNEHAIYIAIADVSTYVHAYSAIDKEARSRGFSIYFPHIAIPMLPRALSENICSLKPNE
DRLAFCFKISLDKNNEVIKEELFEAIINSKRRFNYDEVDKYLQNHEDLGVIDWLYDAFKI
TQNLRKKRLKNACEFKTQELRMSLDENNRLIQTRLESDTASHNLIEDCMLLANKAAAKLI
DVGVFRNHLSPDYKKINQLLSDLSTLSIDINPKNNVIELFKDIQVLANELNIREEVDKLI
IKAQKKAEYSSENAGHFGLGFDRYTHFTSPIRRYSDLILHRLLKAKINNDEKMFNYLLLN
IQSTCEELSLLEREADKVAWYFIDRKFARWAKYNIGKKFKALVIENQSSLQVKLNDDIKG
ALITVVGSRANLLENVEVEITEVDIVSAKIFGKITKHFNLERSQNV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattatttaatcaactaagctatggtctaaatgccaatgaaattaccaataaa
aataagcaaatcattagagaattattaacttgtgatattgttaaattttataaaaacaaa
tactatttaaaagatggttttacttttggtaaaattgatatttcatctaatggaacagga
tttttagaaagttttgatcatactcttaagcgtgacttgctcatagaaaataaaaattta
aaaggagcaaattatgctgatatagttgtagcaaaattactccctcttaaaaaaaagcgt
ccaaatgctaaagttattttaatactcaaaagagctcatgaaacttctttggttataact
aaaaaatatggtgaggttgtacttggagttaatatacaaacaggtttaacatgtgcttta
aaagcttctcaaaaatctttaaaggctttacctttgggaactattttaaaaatagaaaat
catgataataatatcacagaagtaataggacacattgatgatgaatttgtagatgaaaaa
atctctttagcactttttaataaaaatgcagtttttgacactttatgtgagaatgaagca
agagcttatggaaatgaagttgatgcaagtatgtatccttcaagaaaagatattagaaat
ttaaatttttgcaccattgatccagttgatgcaaaagattttgatgatgcaatttattac
gataaaaatgaacatgctatttatatagctatagctgatgtaagtacttatgtacacgca
tatagtgccattgataaagaagcaagatcaagaggattttctatctattttccacatatt
gctatacctatgctaccaagagctttaagtgaaaatatttgctcactaaaacctaatgaa
gacagactagcattttgctttaaaataagcttagataaaaataatgaagtaattaaagaa
gaactttttgaggctatcattaactcaaaacgccgttttaactatgatgaagttgataag
tatttacaaaatcatgaagatttgggagtaattgattggctttatgatgcttttaaaatt
acccaaaatttacgcaaaaaacgcttgaaaaatgcatgtgaatttaaaactcaagagctt
agaatgagtttagatgaaaacaacagacttattcaaacacgccttgaaagcgatacagct
tcacataatctgatagaagattgtatgcttttagcaaataaagctgcagctaaacttata
gatgtaggagtttttagaaaccatttaagccctgattataaaaaaatcaatcaactactt
tctgatttatctactcttagtatagatataaatcctaaaaataatgttatagaactattc
aaagatattcaagtcttggcaaatgagctaaatataagagaagaagtagacaaactcatc
ataaaagcacaaaaaaaagcagaatactctagtgaaaatgctggacattttggcttaggt
tttgatagatatactcattttacaagccctattagaagatattctgatcttattttacat
agacttttaaaagctaaaatcaacaatgatgaaaaaatgtttaattatttgcttttaaat
atacaaagcacttgtgaagaattaagtttactagaaagagaagcagataaagtagcatgg
tattttatagatagaaaatttgcaagatgggcaaaatataatataggaaaaaaatttaaa
gctttagtgatagaaaatcaaagttcattgcaagttaaattaaatgatgatattaaagga
gctttgattactgtcgtaggttcaagagcaaatttattagaaaatgtggaagtagaaatt
actgaagtagatattgttagtgctaaaatttttggcaaaatcactaagcattttaactta
gaaagaagtcaaaatgtataa
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