Campylobacter sp. RM16704: CAQ16704_1008
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Entry
CAQ16704_1008 CDS
T03560
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
camr
Campylobacter sp. RM16704
Pathway
camr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
camr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CAQ16704_1008 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
camr03021
]
CAQ16704_1008 (rpoD)
Transcription machinery [BR:
camr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CAQ16704_1008 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
BRCC36_C
Motif
Other DBs
NCBI-ProteinID:
AJC86465
LinkDB
All DBs
Position
972286..974163
Genome browser
AA seq
625 aa
AA seq
DB search
MANETNTLEELFKENSKDYITYEKLVKYLSKLPNTSSAKKIRDLMNKYKVELISSAEIAK
KKNLEEAKKLQEEKQKLQDISLENEFDLANENDLLEWSRSDSPVRMYLREMGQISLLNKD
EEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFKSFEDDEKNDDE
KNDDEIDSEEENENEENENSNDKKPKKTNKKEDERTLKVIESFKALEKAKKEWLKTISTI
NAENSDDGLLDKLVIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRL
EYRLPMFSEELKQRHQDILKDITKLSKEEITERALETTMVSTYMEIKKLIQTKEASQNSF
DLEKDQLKEILEQIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIG
LMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHL
QKEGKEPDVSIIAKEVGLSIDKVKQVIKITKEPISLEAPISNEDDGKFGDFVEDRTSISP
MDHILKDDLKEQIDDVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQI
ESSAIKKLKHPKVGRKLKNYIEGWK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgaaactaatactttagaagaactttttaaagaaaattccaaagattatatc
acatatgaaaaacttgtcaagtatttatcaaaacttcccaatacaagtagtgccaaaaaa
atccgtgatttaatgaataaatataaggtagaattaatatcttcagcagaaattgcaaag
aaaaaaaatttagaagaagcaaaaaaactacaagaagaaaaacaaaagctacaagacata
agcttagaaaatgaatttgatttagctaatgagaatgatttacttgaatggagtcgatct
gattctcctgtaagaatgtatttaagagaaatgggacaaatttcacttttaaataaagat
gaagaaattgaaatttctaaaaaaattgaactaggtgaagatattattattgatgctttt
tgctctgtgccttatttaatcgactttattcttgattataaagaacctttaataaataga
gaaagaagagttaaagaactttttaaaagttttgaggatgatgaaaaaaatgatgatgaa
aaaaatgatgatgaaatagatagtgaagaagaaaatgaaaatgaagaaaatgaaaattcc
aatgacaagaaacccaaaaaaacaaataagaaagaagatgaaagaactctaaaagttata
gaaagttttaaagctttagaaaaagctaaaaaagaatggttaaaaactatatctactatt
aatgcagaaaatagtgatgatggattattagataaattagtaatagcttttaagaaaaat
atattaaaagaaaaattaatggatcttggtccaacctcaaaacttatttctgaaatagta
aaatccatggaaacagcattaaaaagcgatgaagaatttgataaagaattaaaacgttta
gaatatcgtttaccgatgttttccgaagagttaaaacaaagacatcaagatattttaaaa
gatataaccaaacttagtaaagaagaaattacagaacgagcactagaaactactatggtt
agtacttacatggagattaaaaaacttattcaaaccaaagaagctagccaaaattctttt
gatctagaaaaagatcaattaaaagaaattttagaacaaatcaaacgaggtaaaaaaata
tccgatgaagctaaaactagaatggcaaaatcaaatttacgcttggttgtaagcattgct
aaaagatacaccaatcgtgggttaccatttttagatttaatccaagaaggcaatataggc
ttaatgaaagctgttgataaatttgaatataaacgcggttataaattttcaacttatgca
acttggtggattagacaagccatctcaagagcaattgcagatcaagcaaggacaattaga
attcctattcatatgatagaaactatcaatcaaattaataaaattattcgtgaacatcta
caaaaagaaggtaaagaacctgatgttagtattattgctaaagaagttggacttagtata
gataaagtaaaacaagtaatcaaaatcaccaaagaaccaatttctcttgaagcacctatt
agcaatgaagatgatggcaaatttggagactttgtagaagatagaacctcgatttctcct
atggatcatattttaaaagatgatttaaaagagcaaattgatgatgtattagatcaactc
aatgacagggaaaaagcagttattagaatgcgttttggtttaatggatgatgaaagtgat
agaactttagaagaaattggcaaagagttaaatgttacaagagaaagagtaagacaaata
gaaagttcagctataaaaaaactcaaacatccaaaagtcggtagaaaacttaaaaactac
atagaaggttggaaataa
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