Campylobacter sp. RM16704: CAQ16704_1026
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Entry
CAQ16704_1026 CDS
T03560
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
camr
Campylobacter sp. RM16704
Pathway
camr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
camr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAQ16704_1026 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
camr03400
]
CAQ16704_1026 (mfd)
Enzymes [BR:
camr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAQ16704_1026 (mfd)
DNA repair and recombination proteins [BR:
camr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAQ16704_1026 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AJC86481
LinkDB
All DBs
Position
complement(991275..994223)
Genome browser
AA seq
982 aa
AA seq
DB search
MQAKLYEYLLTNNPELVVCEDDKEADELAQVCLFLKIKVFVLPDFRAEFGSDLRSFSKEL
FEICKVLNAYHKENQKKILISPIKTILQKLPGKEHLKNITLKKNSFLVLEKFKKEILHNG
YEFVDIVQDKGEISIRGDIIDIFAINEEQPFRILLFSDEIESIRYFDIHTQKSIPNELSS
IEICPFLSALNQEQYEILQEKIQNFQSQSIINDVNSLGFWCIDNFYNYLDLNFVSIKKFD
EQDFENNINIINKNILPEPKICKDLVSVYNQDFFTFHKDKQILVLAKNETLFKALNLQEY
SNIEFKISQERVNLITQEKLIISLNKKEKNKRVRKASLVIDELRVGDYVVHEDYGIAKFI
GLEIIAIAGAKKEFVALGYLNNDKLLLPVENLYMIDKYIGASGGVPLLDKLGKGSFLKLK
ERLKEKLFIIASNIVSLAATRALIKAKVLDISEKLQDEFISKAGFLYTKDQEIVCKEISQ
DLKSSRVMDRLLSGDVGFGKTEIAMSAIFTCVKSGFSALFFVPTTLLSSQHYKTLKKRFN
PFEIDVFKLDRFTSSKEKKQILAFLKENKPCVVVGTHSLLGVECENLGLIVIDEEHKFGV
KQKEKLKELSKNSHVLSMSATPIPRSLNQALSSLKSYSILQTPPEDRLDVRTFVRENNDA
LIKEAISREIRRAGQIFYIHNHIASIDGCKKYLLDLFPNLKILILHSKIDAKTTEEEMIK
FENKEYDLLLCTSIVESGIDLANANTIIVENSDRFGMADLHQLRGRVGRSSKQGYCYFLI
EDKEKITKDSLKRLASLESNSYLGSGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYL
KMLEDEINKLSKREESKEKKIDLKLNINAFLNSEYINEDRLRLELYRRLSKCISVNEVYE
IESEMNDRFGRPDVYTKQFLDLIIIKILASKHYKLISNYEQNICFVKNDESKEVIKAKSK
DDDDIIETVLMYLRKGEKREWI
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctaaattatatgaatatttattaacaaataatcctgaacttgtagtttgcgaa
gatgataaagaagcagatgaattagctcaggtttgtttgtttttaaaaattaaagtcttt
gttttacccgattttagggcagaatttggtagcgatttacgttctttttctaaagaactt
tttgaaatttgcaaagttttaaacgcttatcacaaggaaaatcaaaagaaaattttgatc
tctcctataaaaacgattttgcaaaaactaccaggaaaagaacatttaaaaaatattact
ttaaaaaaaaattcatttttagttttagaaaaatttaaaaaagaaattttgcataatgga
tatgaatttgtagatatagttcaggataaaggtgaaatttcaatacgtggagacattata
gatatttttgctatcaacgaagaacaaccttttagaattttacttttttcagatgagata
gaaagtataagatattttgacattcatacacaaaagtctattccaaatgaactttctagc
attgaaatttgcccttttttaagtgctttgaatcaagaacaatatgaaattttacaagaa
aaaattcaaaattttcagagtcaaagtattattaatgatgtcaattctttgggtttttgg
tgtattgataatttttataattatttagatttaaattttgttagtattaagaaatttgat
gagcaggattttgaaaataatattaacataatcaataaaaatattttacctgaaccaaaa
atttgcaaagatttagttagtgtttataatcaagatttttttacttttcataaagataaa
caaattttagtattagcaaaaaatgagactttgtttaaggctttaaatttacaagaatac
tcaaatattgaatttaaaatttcccaagaaagagttaatttaatcactcaagaaaaactt
attatatctttaaataaaaaagaaaaaaacaaaagagtcagaaaggcaagtttagttata
gatgagcttagagtgggtgattatgttgtgcatgaagattatggtattgctaaatttata
ggtcttgagattattgcaatagcaggagcaaaaaaagaatttgtcgctcttgggtatttg
aataatgataagcttttattacctgttgaaaatttatatatgattgataaatacattggt
gcaagtggcggtgtacctttgcttgataagcttggaaaaggaagttttttaaaattaaaa
gaaagattaaaagaaaagctttttattattgcttcaaatattgtatctttagctgcaact
agagctttgattaaggcaaaagttttagatatatctgaaaaactacaagatgaatttata
agcaaagcaggttttttatacactaaagatcaagagatagtatgtaaagaaattagtcaa
gatcttaaaagttctcgtgtgatggatagattgttaagtggtgatgttggttttggaaag
acagaaattgctatgagtgctatatttacttgtgttaagagtggatttagtgctttattt
tttgtgcctactactttgctttcttcgcaacattataagactttaaaaaaaagatttaat
ccttttgaaattgatgtttttaaattagatcgctttacaagctcaaaagaaaaaaaacaa
attttagcttttttaaaagaaaataaaccttgtgtagtagtaggcacacattctcttttg
ggagttgagtgtgaaaatttaggtttaatagtaattgatgaagaacataagtttggcgta
aagcaaaaagaaaaactcaaagaattaagcaaaaactctcatgtattatctatgtcagct
acaccgataccaagaagtttaaatcaagctcttagttctttaaaatcatatagcatctta
caaactcctcctgaagatcgcctagatgtacgcacttttgtaagagaaaataatgatgct
ttgataaaagaagctatttctagagaaataagaagagcaggacaaattttttatatacac
aaccatatagcaagtattgatgggtgtaaaaaatatcttttagatttatttccaaatttg
aaaattttaatcttacattcaaaaatagatgcaaaaactactgaagaagaaatgattaaa
tttgaaaataaagaatatgatttattgctttgtacttctatagttgaaagtggtattgat
ttggcaaatgccaatactattatagttgaaaattcagatcgctttggaatggctgatttg
catcaacttagaggaagagtagggcgtagttctaagcaaggttattgttattttttaatt
gaagataaggaaaaaattactaaagattctctaaaacgacttgcaagcctagaaagtaat
tcttatttgggttcaggtagcgtgcttgcttatcatgatttagaaattcgtggtggtgga
aatttattaggtgtagatcaaagtggtcatatagaacaaattggttatagtttatatctt
aaaatgttagaagatgaaataaataaacttagtaaaagagaagaatctaaagagaaaaaa
atagatttaaaacttaatatcaatgcctttttaaatagtgaatatattaatgaagatcgt
ttgagattggagctttatagaaggcttagtaaatgtataagtgttaatgaggtttatgaa
atagaaagcgaaatgaacgatcgttttggtagacctgatgtttataccaagcagtttttg
gatttaatcattataaaaattttagctagtaagcattataaattaataagtaattatgaa
caaaatatatgctttgtaaaaaatgatgaaagtaaagaagttattaaggcaaaaagtaaa
gatgatgatgatataattgaaacagtattgatgtatttacgaaaaggtgaaaaacgtgag
tggatatga
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