Cyclobacterium amurskyense: CA2015_0570
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Entry
CA2015_0570 CDS
T03993
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
camu
Cyclobacterium amurskyense
Pathway
camu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
camu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA2015_0570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
camu03019
]
CA2015_0570
03400 DNA repair and recombination proteins [BR:
camu03400
]
CA2015_0570
Enzymes [BR:
camu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CA2015_0570
Messenger RNA biogenesis [BR:
camu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA2015_0570
DNA repair and recombination proteins [BR:
camu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CA2015_0570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_Crp_2
Fe_dep_repress
HTH_27
DUF1413
Motif
Other DBs
NCBI-ProteinID:
AKP50037
UniProt:
A0A0H4PP82
LinkDB
All DBs
Position
complement(715915..717837)
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AA seq
640 aa
AA seq
DB search
MDKVDTSALAILKKYFGYQDFRPLQGEIVAAIAERKDALVLLPTGGGKSICFQVPALMQE
GLCLVISPLIALMKDQVDQLKSRGIKAMAIHSGLHKREIDTLLDNCIYGDYKFLYVSPER
LKTELFIERFKKMNVNLIAVDEAHCISQWGYDFRPSYLEIVDIRALVPKVPMVALTASAT
LKVREDIIDKLALKEPSIFVKSFKRDNLSYSVRWAENKLEKAVEILQKVPGTAIIYTRSR
KGTKETAQHLQQLGISATYYHAGLNQGIRNERQINWIKGEVRVMVATNAFGMGIDKANVR
LVIHLDFPENLENYYQEAGRAGRDGIKAFAVLLVREMDCISLAEMAEIAYPPEDLLKRVY
QCLANYYRLAVGSAQMTSFDFDFLDFTRAYNLDVPLTYNAIKVLQEEAFLLFSESVFLPS
TLHFLVSQSKLYEAQIAYAKLDPLIKLLLRLYGGELFVNYIRIKESKIAQLLNTTEKEVV
GMLKKMDELGLVDFSGKKDQPQITFITPRLDAGSLPLNKKRIGERRAQAIEKAQKIIEYA
KNNKICRTLQIVNYFGEKGDFSCGICDNCVQNKKETNKAIVRKKLIDKILKTLAAGEAFS
LKELFSEIGENLDEFSVGLIRELEDEGLISTEKNGKIKKK
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggataaggtagatacttcagcattagccatcctgaaaaaatattttgggtaccaggat
ttccgaccgcttcagggggagatagttgctgccatagcagaaaggaaagatgccttggtg
ttgttgcctacaggtggaggaaaatcaatttgttttcaagtacctgcattgatgcaagaa
ggattgtgtctcgtgataagtcccctaattgccctaatgaaagatcaagtagatcaattg
aagagtagggggattaaagccatggccatccattcaggtttgcataagagagaaattgac
acccttttagacaattgcatatacggtgactataagtttctatacgtgtctccggaaagg
cttaaaacggagcttttcatagagcgatttaaaaaaatgaatgtaaacctcatcgcagtg
gatgaagcccactgcatctctcaatggggttatgattttagaccttcctatctggaaata
gttgacattagggctttagttccaaaagtaccgatggtcgcgcttacagcatcggctacc
cttaaggtaagggaggacatcattgacaaattagcgcttaaagagccatctatttttgtc
aaatctttcaagagagataatttgtcttactccgttcgttgggcggaaaataaattggag
aaagcagtagaaattcttcaaaaggtgcccggcactgccattatctatacaagaagcagg
aaagggaccaaggaaactgctcagcacctacagcagcttgggatttctgcaacctattac
catgctggtttgaatcaggggattagaaatgaaaggcaaatcaactggatcaagggagaa
gtacgcgtcatggtggccaccaatgcctttggtatggggatagataaggcgaatgtacgt
ctggttattcatttggatttccctgagaacctggaaaactattaccaagaagcaggaagg
gcaggaagagatgggataaaggcatttgctgttcttttggttcgggaaatggactgcatc
tctttggccgaaatggcagaaatagcataccctcctgaggatttgctaaaaagagtgtac
caatgcctggcaaattattacaggttggcagtaggtagtgctcaaatgacaagttttgac
tttgattttctggattttacccgagcctataatttggatgttcctcttacatacaatgcc
ataaaagttcttcaagaagaagcctttttgcttttttcagaaagtgtgttccttccctca
accttgcattttctggtctcccaaagcaagttgtatgaggcgcagattgcttatgcaaag
ttggaccctttgataaagcttttgttgaggttatatggtggagagttgtttgtgaattat
atccgaattaaagaaagcaaaatagcccaattgttgaatactaccgagaaagaggtggtt
gggatgttgaaaaaaatggatgagcttggtttggtggatttttccggaaaaaaagatcag
cctcaaataacctttattacaccaaggcttgacgcgggatctttgcctttaaataaaaag
cgaataggggaaagaagagctcaggccatagagaaagcccagaaaatcatagaatatgct
aaaaacaataaaatttgtcgtacgctacagattgtaaactattttggagagaaaggtgat
ttttcctgtggtatttgtgacaattgcgttcaaaataaaaaagaaactaataaggcaatt
gtcagaaaaaaattgattgataaaatacttaaaactttagcagcaggagaggcgttttca
ctaaaggaattgttttctgagatcggagaaaatttagatgaattttctgtaggtttgatt
agagaattggaggatgaggggttgatttccaccgaaaaaaatggtaaaatcaaaaagaaa
tga
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