Cyclobacterium amurskyense: CA2015_1992
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Entry
CA2015_1992 CDS
T03993
Name
(GenBank) DNA polymerase III epsilon subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
camu
Cyclobacterium amurskyense
Pathway
camu03030
DNA replication
camu03430
Mismatch repair
camu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
camu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CA2015_1992
03430 Mismatch repair
CA2015_1992
03440 Homologous recombination
CA2015_1992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
camu03032
]
CA2015_1992
03400 DNA repair and recombination proteins [BR:
camu03400
]
CA2015_1992
Enzymes [BR:
camu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CA2015_1992
DNA replication proteins [BR:
camu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CA2015_1992
DNA repair and recombination proteins [BR:
camu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CA2015_1992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
GST_C
Motif
Other DBs
NCBI-ProteinID:
AKP51419
UniProt:
A0A0H4PB21
LinkDB
All DBs
Position
complement(2384684..2388970)
Genome browser
AA seq
1428 aa
AA seq
DB search
MYLIFDTETTGLPRNYNAPMSDLDNWPRLVQLAWQLHDEKGRLVSNNNFIVKPEGFTIPY
NSEKIHGISTQRAIDEGHELSKVLEIFEEDLRKTTYLVGHNIGFDISIVGAELLRTNKSI
KDLEKEPLDTKDISTEFCAIPGGKGGKFKWPTLLELHNKLFGEGFGDAHDAAYDVDATAK
SFFGLIKEGVQPPVEGVELDEIIYEAPNLEAANFAAAKDDVKVTAQKVLKAANRADISDL
KDTLFTHLHVHTQFSILQSTSEIPAAIKRAKELGMPALAMTDHGNMMGAFNFVREAFNND
IKPIIGCEFNLCRDRKNKSNKDDGYQTVLLAKNKAGYHNLAKLSSYANIEGFYYVPRIDR
EVLVQYKGDIIATTGGLWGEIPYLILNVGETQAEEAFVWWLDQFGEDFYIELNRHGIPEE
EKVNEVLLQWAEKYKVKYFAANNTYYNAQEDAKSHDILLCVKDGELVEKPKKYIGKRGRE
YRYGFPNDEFYLKSPEEMKKLFADLPEAILCTEEIVEKIEPFKLAREVLLPKFDIPEQFI
DSKDDEDGGKRGENAFLRHLTYEGAKKRYGEITDEIRERLDFELETIERTGYPGYFLIVQ
DFTSAAREMGVSVGPGRGSAAGSAVAYCVGITNVDPIAYDLLFERFLNPDRVSLPDIDID
FDDEGRQRVIDYVIEKYGANQVAQIITYGTMAAKSAIRDTARVLNLPLPEADRLAKLVTD
IKLKALFELANDRTKLSAKLKNNNDNLEKALELIRISKGNDESSRTINQAKVLEGSVRNT
GIHACGVIITPDDITNFVPVALAKDSEMVCTQFDNSVVESAGLLKMDFLGLKTLTLIKDA
VRIIKERHGILLDPENFPIDDVKTYELFQRGETVGIFQYESAGMQKYMRELKPTVFADLI
AMNALYRPGPLEYIPSFIKRKHGLETITYDLEDMKEYLEETYGITVYQEQVMLLSQKLAD
FTKGEADVLRKAMGKKQKNVLDQMKPKFVNQAAAKGHDSKKLEKIWKDWEAFASYAFNKS
HSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMNDITQVTFFMEECKRMGIQVLGPDVNES
KSDFTVNMEGQVRFGLAAIKGAGNAAVHAIIEEREKAGLYKDIFSFTKRVNLKAVNKKTM
EVLAMAGGFDCFVDFHRRQYLEAPEGEASLLEKAVKYAQKVIQEEESSQVSMFGGGGGLD
IPVPTIPPMEPFSQLQQLNIEKEVVGLYISGHPLDQYKVEIEAFTNTGLPELADVNKLKS
KGDIKIAGAVTSFAHRTTKNGKPFGTLTMEDYHGGHTFFIFGEDYVRFKEYFMHNWFLYI
TGAIHPKKYNPEEFEFKISQITLLNEIRGKMIKGLRVHIDLDDLGLELMEKLEAITQKYQ
GDAKLYINIIDNKENLTLDLISSKYRVDPSNELIEALNQIPEVAYKII
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtacctaatatttgatactgagactactggacttccgcgcaattacaatgcgcccatg
tctgaccttgacaattggccacgtttggttcaactggcctggcaacttcatgacgaaaaa
ggccgacttgtttcgaacaataactttatagtaaaacctgaaggatttaccattccctat
aactcggaaaaaatacatggtatttccactcaaagagccatcgatgaaggacatgaacta
agtaaggttctagaaatttttgaagaagacctccgcaaaacaacctatctcgttggtcat
aatattggctttgatatctccattgtaggggctgaattattgagaaccaacaagtctatt
aaagacttggaaaaagagccacttgatacgaaggatatttctactgaattctgtgccatt
cctggagggaaaggtgggaaattcaaatggcctaccctgcttgaacttcacaataaacta
tttggagaaggttttggcgacgcccatgatgctgcttatgatgtagatgctactgctaaa
agttttttcgggcttatcaaggaaggagttcagcctcctgttgaaggcgtagaactggat
gagataatttatgaggctccaaatctggaggccgctaattttgctgccgcaaaagacgat
gtcaaagtcacagcccaaaaggtccttaaggccgccaatcgtgcggacatttcagatctt
aaagacacgctttttactcacctgcatgtccatacccaattttctattctccaatctacc
tcagaaatacctgccgctatcaaaagggcaaaagaattagggatgccagcattggccatg
acagatcatggcaatatgatgggtgccttcaactttgttcgtgaggcatttaataatgac
atcaaaccaataatcggctgcgaattcaacctttgtcgagaccggaagaataagtccaat
aaagacgatggataccaaactgttttactggcaaaaaacaaagcaggttaccataacctg
gctaaactttcttcctatgccaatatagagggtttttattatgtgcctcggatagataga
gaggtgctggttcaatataagggtgacatcattgctaccacgggtggactttggggtgaa
atcccttacctcatcctcaatgtgggtgaaacccaggctgaagaggcttttgtatggtgg
ttggatcaatttggagaagatttttatatagagcttaaccgtcatggtattcccgaggag
gaaaaagtgaatgaagtgctcctccaatgggcagaaaaatacaaggtgaagtacttcgct
gccaataatacctattacaatgctcaggaagatgctaaatcacatgatattttattgtgt
gtgaaggatggagaactggtagaaaaacctaagaaatacataggaaagagaggccgggaa
tatcgatatggtttcccgaatgatgagttttatctcaaatcccctgaggagatgaagaag
ctttttgctgatttaccggaagccatcttatgtacagaggaaattgtagaaaagattgag
cctttcaaactggctagagaagttttgctgccaaaatttgatattccagaacaattcata
gactctaaagatgatgaagatgggggaaaaaggggagaaaatgcctttttgcgtcacctc
acttatgaaggagctaaaaaaagatatggagaaataacagatgagataagggaaaggttg
gatttcgaattggagactatcgaaagaaccggctatccaggttatttccttattgtacaa
gatttcaccagtgctgctagagaaatgggggtctcagtagggcctggaaggggttctgcc
gccggttctgcagtagcctattgtgtgggcatcaccaatgtggatccaattgcctacgac
ctactttttgagagattcctaaaccctgatagggtgtcactacccgatattgatattgac
tttgatgacgaagggagacaaagggtaatcgactatgttatagagaaatacggagccaat
caggtagcccaaatcattacttatggaacaatggcagccaaatctgccattcgtgatact
gcaagggtactcaaccttccccttcctgaagcagataggcttgccaaacttgtgacggat
atcaaacttaaggccctttttgaattggccaatgaccgtaccaagctatcagccaaactt
aaaaacaacaatgataatttagagaaagcattggagcttatccgaatttcaaaaggaaat
gacgaaagttcgagaacgattaatcaggccaaggtcctggaaggctctgtaagaaacaca
ggtatacacgcctgtggggttatcattacaccggatgacattaccaattttgtccctgta
gcacttgctaaggattctgaaatggtatgtacccaatttgataactccgttgttgaaagt
gccggcttacttaaaatggactttttgggtctgaaaaccctaaccctaatcaaggacgcg
gtaaggatcattaaggagcgacatggtatattactggatcctgagaactttcctattgat
gatgtaaagacgtatgaacttttccaaagaggtgaaacggtaggtatattccagtatgaa
tctgcaggtatgcaaaaatacatgagggagttaaaacctactgtatttgctgaccttatc
gccatgaatgccttgtacaggccaggtcctttggaatacattcctagtttcattaaaaga
aaacatggattagagaccattacttatgatctcgaggacatgaaggaatacctggaagaa
acttatgggatcacagtctaccaggaacaagtgatgcttctgtcgcagaagctggctgat
tttaccaaaggtgaggcagatgtactgcgtaaagccatgggtaagaaacagaagaacgtt
ctggatcagatgaagccaaagttcgtcaatcaggcagcagccaaaggccacgacagtaaa
aaattagaaaaaatatggaaagactgggaggcttttgcttcttatgcctttaacaagtcc
cactccacttgctacgcttggattgcctatcaaacggcctacctaaaagcacattaccct
gctgaatacatggcctcagtattgagcaataacatgaatgacattacgcaggtcaccttc
tttatggaagaatgtaagcgtatgggcattcaagttcttggtcctgatgttaatgagtcc
aaaagtgattttacagtaaatatggaaggacaggtaaggtttggtctggcagcaatcaaa
ggtgctggaaatgccgctgtacatgccataattgaagaaagggaaaaagcaggcctttac
aaagacatcttttcctttaccaaaagggtaaacctcaaagcagtcaataaaaaaaccatg
gaagtattggccatggctggtggttttgattgttttgtagactttcaccgcagacaatac
ctagaagcacccgaaggagaggcttctcttttagagaaagccgtaaaatatgcgcagaag
gtaattcaagaagaagaaagttcacaggtctcaatgtttggcggcggtggtggattggac
attcctgttccaactattcctcctatggaaccctttagtcaattgcaacagttgaatatt
gaaaaggaagtcgtagggctttatatttctggtcatcctctggatcagtacaaggtggag
atagaagcatttaccaatacaggattaccagaactggcagatgtcaataagctgaaatcg
aaaggagatattaaaattgcaggtgccgtaacctcctttgcccaccgaacaactaaaaat
ggaaaaccgtttggcacccttaccatggaagattatcatggtggccatacctttttcatc
tttggggaggattatgtgagattcaaggagtatttcatgcacaactggtttttatatatt
acaggtgctatccatccaaaaaaatacaaccctgaagaatttgaatttaaaatcagccaa
atcactttactaaatgaaataagaggtaaaatgattaaaggtttaagggtgcatatagac
ctggatgatcttggattggaattaatggaaaaattagaggccattacccaaaaataccaa
ggtgatgctaaattatatataaatattatagacaataaagagaatttgacattggatctt
atatcctccaagtacagggtagacccatcaaatgaactaatcgaagcattgaatcaaatc
cccgaagttgcctacaaaatcatttga
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