Cyclobacterium amurskyense: CA2015_2512
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Entry
CA2015_2512 CDS
T03993
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
camu
Cyclobacterium amurskyense
Pathway
camu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
camu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CA2015_2512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
camu03021
]
CA2015_2512
03400 DNA repair and recombination proteins [BR:
camu03400
]
CA2015_2512
Enzymes [BR:
camu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CA2015_2512
Transcription machinery [BR:
camu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CA2015_2512
DNA repair and recombination proteins [BR:
camu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CA2015_2512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
RALGAPB_N
Motif
Other DBs
NCBI-ProteinID:
AKP51923
UniProt:
A0A0H4PGI2
LinkDB
All DBs
Position
3035825..3040135
Genome browser
AA seq
1436 aa
AA seq
DB search
MAFRKNKKLNNDFSRVTISLASPESILDSSHGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIVYYERYVVINAGIKADDGLQYLDFLTEDEYLDIMDKLPKENQMMDD
DDPNKFIAKMGAEALEMLLARLDLDDLSYSLRHQAATDTSQQRKAEALKRLKVVEAFRDA
RTRIENRPEWMIVRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGHEAILEASTLMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGMRSTPEKVVE
GEGMTFYGLEEVLIALNEGAISKHAFIKCKVKVRKDDGSLADEIIETVAGRLIFNQFVPE
EVGFVNELLTKKKLQQIIAEVVKICGIARSAQFLDDIKHLGFQTAFQGGLSMGLDDVIIP
DEKDPLIAKATTDVDQVWNNYLMGLITDNERYNQVIDIWTRTNSNLTNILMRQMEEDNQG
FNAIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLVDVAQDMIVSEEDCGTLRGLVVQALKDNDEI
VEPLSERIVGRIAVHDVIDPLTDELILESGGEISDDIAKIIDESAVEEVEIRSVLTCETR
RGVCCKCYGRNLTTGSIVQVGESVGVIAAQSIGEPGTQLTLRTFHVGGTASNISVEANIN
SKFDGIVEFEEELRWIKTTNKDGEDVSIVMGRSGEIKINDVKSGKTLVSNHVPYGAILNV
KDGQKITKGDSLCTWDPYNAVILSEFDGKVDFEAILEGITYKEVADDQTGYREKVIIDTK
DKTKNPAVVVEHGDDSKSYNIPVGAHLSVEKGEDVKAGQILVKIPRSVGKTRDITGGLPR
VTELFEARNPSNPAVVSEIDGVVLYGGIKRGNREIFIESKDGVKKRYMVSLSKHILVQEN
DFIRAGEPLSDGAITPNDILSIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIEVIVSQMM
QKVEILDAGDTGFLQNQIVDKWAFREENDMILDKKVVVEPGDSATLKAGMIITARRLRDE
NSSLKRKDLKVVQVRDAQTSVSRPTLQGITASSLGTESFISAASFQETTKVLSEAAIRGK
RDELLGLKENVIVGHLIPAGTGQRKFNNLIVGSKEEYELLTAEKEAGSKKVRETVK
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagaaaaaataaaaaactaaacaacgacttttccagagtcaccattagtttg
gcttcacctgagtccatcttggacagttcgcatggtgaggttacacaacctgaaacgatc
aattacagaacttacaagcctgaaatgggtggattgttttgtgagcgaattttcgggccg
gtaaaagactgggaatgtcattgtgggaaatacaagcgcataaggtacaaagggatcatc
tgcgaccgttgtggtgtagaggttaccgagaagaaggtaaggagagagcgaatgggccac
atagaattggttgtgcccgtagcgcatatctggtacttcaaatcccttcctaataagatt
ggttatcttttgggactgcctacaaaaaagctggatcaaatcgtttattatgaaaggtat
gtagtcatcaatgctggaattaaagcagatgatgggttacaatacttggatttcctaacc
gaggatgaatatcttgatataatggataagcttcctaaggaaaatcaaatgatggatgac
gatgatccgaataagtttattgccaaaatgggtgctgaagcgcttgaaatgcttttggca
agacttgatttggatgatctatcttatagccttagacaccaggccgctacagatacttcg
cagcaaagaaaagctgaagcattgaagcgacttaaagtggttgaagctttcagagatgcc
aggacaagaatagaaaacaggcctgaatggatgattgtacgaatggtaccagttattcca
ccagagcttcgtcctttggttcctctcgatggtggtagatttgctacttcggatttgaat
gacctttacagaagggttattattagaaataaccgtctaaaaagactaatagatattaag
gcaccagaagtaattcttagaaatgagaaacgtatgcttcaggaagctgttgattcctta
tttgacaattcaaggaaagtcaatgcggtaagatctgatggaaacagggcattaaaatcc
ctgtccgacatgttgaaaggtaagcagggtcgattccgtcaaaaccttttaggaaaaagg
gttgattattccggacgttctgtgattgtagtagggcctgagcttaaactacatgaatgt
ggattgcctaagaatatggcagcggagcttttcaaaccttttattatcaggaaactaata
gaaagaggaattgtaaaaactgtaaaatctgctaagaaaatagtcgataggaaagaccca
gttgtctgggatatccttgaaaacgttctgaaaggccaccctgtaatgctaaaccgtgca
ccaactctgcacaggctaggtattcaggcgtttcaaccaaagttgattgaaggaaaagca
attcaacttcatccacttgtttgtactgcctttaatgcggattttgatggtgaccagatg
gccgttcacgttcctttgggacatgaagctattttggaagcctctacattgatgctttct
tcacacaatatccttaaccctgccaatggtgcacctattactgttccttcacaggatatg
gttttgggactgtattatgtaaccaagggaatgagatctactcctgagaaggtagtagaa
ggtgaaggaatgactttttatggacttgaagaggtattgattgcactgaatgaaggtgcc
atttcaaaacatgctttcattaagtgtaaagttaaagttagaaaagacgacggttctcta
gcagatgaaataatagagacagtggctggtagattgattttcaaccagtttgtgccagaa
gaggtaggattcgtaaacgaattattgaccaagaaaaaattacagcaaatcattgctgaa
gtggttaagatttgtggtattgctcgttctgcacagtttcttgatgatatcaagcactta
gggttccaaacagccttccaaggaggtctttctatgggacttgatgatgtaattatccca
gatgagaaagatccattgatagcgaaagctaccactgatgtagatcaggtatggaacaac
tacttgatgggattgatcactgataacgagcgatacaatcaggtcatcgatatatggacc
cgaaccaactctaacctgacaaatatccttatgcgtcagatggaggaagataatcaagga
ttcaacgccatttacatgatgatgcactccggagcccgtggttctcgtgagcaaatcaga
cagttgggtgggatgcgtggtcttatggccaagcctcagaaaaatcttcaaggatctgtt
ggagaaattattgaaaaccctattctatccaactttaaagaaggattggatgtattggag
tactttatctctactcacggtgcaaggaaaggtctagcggatacagcactaaaaactgct
gatgctggatatttgactagaagacttgtggatgtagcgcaggatatgattgtatctgaa
gaggattgtggtactttgagagggcttgtagttcaagcattgaaagacaatgatgagatc
gttgagccattatctgaacgaattgttggtagaatcgcagttcatgatgtaatagatcct
ttaacagatgagttaattcttgaatctggtggagaaatcagtgatgatattgctaagatc
attgatgaatctgcagtagaagaagtagaaattcgctctgtattaacttgtgaaaccaga
agaggtgtttgctgtaaatgttacggacgtaaccttacaactggtagtattgtacaagtt
ggagagtctgtaggtgtaatcgcagcacagtctattggtgagccaggtactcagttgacc
ttaagaacgttccacgttggtggtacagcttccaatatatcggttgaagcgaacatcaat
tccaaatttgatggaattgtagaattcgaagaagagcttagatggatcaaaaccaccaat
aaagatggtgaagatgtttctatcgtaatgggccgatcaggcgaaatcaagattaatgat
gtaaaatcaggaaaaactttggtttctaaccatgttccttacggagcgattcttaatgta
aaagatggtcagaaaattaccaaaggtgattctttatgtacctgggatccatacaatgcg
gttattctttctgagtttgacggtaaggttgattttgaagcaattcttgaagggataact
tacaaggaagtagctgatgatcaaactgggtatagagaaaaggtaattatagacactaag
gataaaaccaaaaaccctgcggttgtagtagaacatggagatgattccaagtcttacaac
attccagtaggggcacacctttccgtagaaaaaggagaggatgtgaaagcaggtcaaatc
cttgtgaaaatcccaagatctgttggtaagacaagagatattaccggtggtcttccaaga
gttaccgagcttttcgaagcaaggaacccttcaaaccctgcagtggtatctgagattgat
ggagttgtattgtacggtggtatcaaaagaggtaatcgtgagatcttcattgaatctaaa
gatggagttaagaaaaggtacatggtatctctttctaagcacatccttgttcaagagaat
gatttcattagagctggagaaccactttctgatggagcgataacgcctaacgatatattg
tctatcaaaggcccaacagctgttcaggagtacttggtaaatgagattcaggaagtatac
cgtctacaaggtgtaaaaatcaatgacaagcacatcgaggtaattgttagccagatgatg
cagaaagttgaaatacttgatgctggagatacaggtttccttcagaatcaaattgtagac
aagtgggctttccgtgaggaaaatgacatgatccttgacaagaaggtagttgtagagcct
ggagattcagccacgcttaaagcgggtatgataatcactgcgcgaagacttagagatgag
aactctagcctaaaacgtaaagaccttaaagtggttcaagtaagagatgcacaaacatct
gtttccagacctactttgcaaggtattacggcttcttcattgggtactgaaagctttatt
tctgctgcttcattccaggagaccactaaggtacttagtgaggctgctattagaggcaag
cgagatgagctacttggacttaaagagaacgtcattgtgggtcaccttattccagcagga
acagggcaacgaaaattcaataatttgatcgttggatcaaaagaagagtatgagttgttg
actgctgaaaaagaggcgggtagcaagaaagttcgagagacagttaaataa
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integrated database retrieval system
