Cyclobacterium amurskyense: CA2015_2726
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Entry
CA2015_2726 CDS
T03993
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
camu
Cyclobacterium amurskyense
Pathway
camu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
camu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA2015_2726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
camu03019
]
CA2015_2726
03400 DNA repair and recombination proteins [BR:
camu03400
]
CA2015_2726
Enzymes [BR:
camu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CA2015_2726
Messenger RNA biogenesis [BR:
camu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA2015_2726
DNA repair and recombination proteins [BR:
camu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CA2015_2726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_Mga
HTH_10
Receptor_IA-2
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AKP52136
UniProt:
A0A0H4PCG6
LinkDB
All DBs
Position
complement(3282642..3284819)
Genome browser
AA seq
725 aa
AA seq
DB search
MDKEVKDNLKKIFGFNQFRGNQQLIVDNILKGNNTFVIMPTGAGKSLCYQLPAVSKSGTA
IVISPLIALMKNQVDQLNSFGINAHFLNSTLSKTESNRVKGEVSAGLTKLLYVAPESLTK
EENVKFLKNADISFVAIDEAHCISEWGHDFRPEYRKIKSIISQIGDNLPVIALTATATPK
VQQDIQRNLQMEEADLYKSSFNRTNLYYEVRPKVKNETKKEIIKYIKSQKGKSGIIYCLS
RKKVTEIAELLKVNGINAAPYHAGLDGHVRVKNQDDFLNEEVDVIVATIAFGMGIDKPDV
RYVIHYDVPKSLEGYYQETGRSGRDGLEGHCLMFYRYEDIVKLEKFNKDKPVNERENARV
LLQEMAAYSESSVCRRRFLLHYFGETLSTDCGFCDNCKKTKETFEGKDDIVKVINAVKET
NQRFSMDHIVSLIRGEENDYILSYDHNKLPSFGVGKDKDEIHWKTVLRQAMIFGFLEKDI
ENYGIILLSDQSEAFLKKPHSVTLSKNHNFDKMAESVSSEEMNTIGKAYDEKLYELLKLE
RKKVAKAKNLPPYVIFQDPSLEEMATVYPTTSEELAQINGVGMGKVSKFGRSFLRLIENY
VEENEIITASDVVVKTSGIRSKVKITIIQQIDRKIDLDEIANNLNISMSDLLHEIEQIIY
SGTKLNINYYIENIMDDEREDILQDYFMTAESDHIKDAMAELEDDDFAEEEVRVYRIKFI
SDHAN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtggacaaagaggttaaagataatttaaaaaaaatatttggtttcaatcaattcagagga
aaccaacagttgatagtggacaatattctgaagggcaacaataccttcgtaataatgcca
acaggcgcagggaagtcactttgttatcaattgccagctgtctctaaaagcgggacagcc
atcgtcatctctccattgatagccctgatgaaaaatcaggtggatcaattgaacagtttt
ggcataaacgctcattttctaaactctaccctcagtaaaacagaatccaatagggtgaaa
ggtgaagtcagcgccggtcttaccaaattgctctatgtagcacctgagtcgctgacgaag
gaagagaatgtcaaattcctaaaaaatgcagacattagctttgtggccatagacgaagcc
cactgtatttctgaatggggccatgatttcagaccagaataccgaaagataaaatccatt
atttctcaaattggggacaaccttccagtaattgccttaacggctacagctacgccaaaa
gtccaacaggacattcagcgtaacctacaaatggaagaggctgatctctataagtcttcc
ttcaataggaccaacctctattacgaggttaggcctaaggtcaagaatgaaaccaagaaa
gagataattaaatacataaaatcccagaaaggtaaatctggaattatttattgcctgagc
agaaaaaaagttactgaaatagctgagctattgaaagtgaacgggatcaatgctgcccct
tatcatgctggccttgatggtcacgtgagggtgaaaaatcaggatgatttcttaaatgag
gaagtagatgtaatcgtagcgaccatagcctttggcatgggaatagataaacctgatgtc
aggtatgtcatccattacgatgttccaaaatcacttgaaggatactatcaggaaactgga
aggtcaggaagggatggacttgagggtcactgtctgatgttttacagatatgaggacatt
gtcaaattggagaaattcaataaggacaaaccagtaaatgaacgggaaaatgccagggta
ctcctacaggaaatggcagcctactctgaaagttctgtttgccgcagacgatttctttta
cactattttggagagaccttatctaccgattgtggcttttgcgacaactgtaaaaaaacc
aaggagacctttgaaggaaaagacgatattgtaaaagttattaatgctgtaaaggaaacc
aatcagcggtttagtatggatcatattgtcagccttatcaggggtgaggagaatgattat
atactaagctatgaccacaataagcttccttcattcggtgtaggaaaagacaaagacgaa
atccattggaagaccgttttaaggcaggctatgatttttggcttccttgaaaaagacata
gagaattacggtataattttactttcagatcagagtgaagctttcttaaaaaaacctcac
tctgtcacgctaagtaaaaatcataattttgataaaatggcagaaagcgtttcatcagaa
gaaatgaatacgatcggtaaagcctacgatgaaaaactttatgagttattaaaacttgaa
cgtaaaaaagtagccaaagctaaaaatttacctccctatgtaatcttccaagacccttcc
ttagaggagatggctacggtctaccctactacctctgaggaattggctcagataaatgga
gttggaatgggaaaggtcagcaagtttggcaggtcttttcttaggttgatagagaactat
gtagaggaaaacgagatcattactgcctcagatgtagtagtaaagacatcaggcataagg
tctaaagttaaaatcactattattcaacagatagacaggaaaattgaccttgatgaaatt
gccaataacctgaatattagcatgagcgatttactgcacgaaattgagcagataatctat
agtggaactaaattaaacatcaattattatatagaaaacatcatggatgatgaacgagaa
gacatcctccaagattattttatgacagctgaatcggatcatatcaaagatgccatggca
gaacttgaagacgatgactttgcagaagaagaagtccgcgtttaccgaatcaaattcata
tcagatcacgccaattaa
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