Cyclobacterium amurskyense: CA2015_4534
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Entry
CA2015_4534 CDS
T03993
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
camu
Cyclobacterium amurskyense
Pathway
camu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
camu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA2015_4534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
camu03019
]
CA2015_4534
03009 Ribosome biogenesis [BR:
camu03009
]
CA2015_4534
Enzymes [BR:
camu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CA2015_4534
Messenger RNA biogenesis [BR:
camu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA2015_4534
Ribosome biogenesis [BR:
camu03009
]
Prokaryotic type
rRNA helicases
CA2015_4534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
VD10_N
Motif
Other DBs
NCBI-ProteinID:
AKP53872
UniProt:
A0A0H4PZN3
LinkDB
All DBs
Position
5645765..5647471
Genome browser
AA seq
568 aa
AA seq
DB search
MEKELLFSDLGVSEEILRAVEDMGYTQPSPIQAQTIPLLLQGADVIGQAQTGTGKTAAFG
IPIIDRIDSSNSKPQALILCPTRELAVQVEGEIVKLTKYNRKISSTCIYGGEAIDRQIRS
LKKGVQIVVGTPGRIMDHMDRRTLDLSKVSIIVLDEADEMLDMGFRDDIEKILSSMPNER
QTVFFSATMPKPILELTRKYQTDPEIIKVLRKELTVENISQLYFEVRSGLKTDLISRLIN
LHQYKLSVIFCNTKRVTDEVTEELTAKGVPAEALHGDLSQAQRTKVMNKFRKGHCSVLVA
TDVAARGIDVENVEAVFNFDLPLDEENYVHRIGRTGRAGKSGTAISFVSGRRDAGKIRDL
ERFIKTSIDKAAPPSVDQLIQMKRDQLTKDIHRQLAKEDDNTVFEQAIESLQAEGLSLEQ
IALSLVKMQLGEAIDKFKEMNFTPEKDRGGRDDRRSKRDRGDRGDRGTRGRSGERGDRSG
RRGGKKEREPNMARLFLNLGKKDRIRPNDIVGAIAGETGVSGGSIGEIDIYDSFSFVDIP
KKDASHVINVMNTNTIKGKQVNFEISKP
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaattattattttcagaccttggggtttcggaagaaatcttaagggcggta
gaagatatgggctatacccaaccttcacccattcaagcgcaaaccatccccttattatta
caaggtgcagatgtaattggtcaggcacaaacaggaacaggtaaaacagctgctttcggt
ataccaataattgatcgtatagacagttcaaatagcaagcctcaagctttaattttatgc
cctactagagaattagctgttcaggtagaaggagaaatcgttaaattaaccaagtacaac
aggaaaatatcatctacttgtatctatggtggtgaggcgattgataggcaaatcagaagc
cttaaaaaaggtgttcaaattgtggtaggtactcctggaaggattatggatcacatggac
agaagaaccttagatcttagcaaagttagcatcatcgtgctggatgaagctgacgaaatg
ttagacatgggatttcgtgatgatatagaaaagatattgagctctatgcctaatgaaagg
caaacggttttcttttcggctactatgcctaaacctattctagagcttactagaaaatat
caaacagatcctgaaataattaaggtattacgtaaggaacttactgtagagaacatctct
caactttattttgaggtaagatcaggattaaaaactgatttaataagcaggctaatcaat
cttcaccaatacaagcttagtgtgattttttgtaacactaagagggttacagatgaagta
actgaagagttaactgctaaaggtgtacctgctgaagctttacatggtgacttgtcacaa
gcacaaagaaccaaggtaatgaacaaattccgtaaaggacattgttcagtattggtagca
actgatgttgctgctaggggaattgatgtagagaacgttgaagctgttttcaattttgac
cttccacttgatgaagagaattatgtccatagaataggacgtacaggaagagctggtaaa
tcaggtacagcaataagctttgtatctggaagaagagacgctggaaaaatccgcgacctg
gaaagatttatcaaaacaagcattgataaggctgctcccccatccgtggatcagttaatt
caaatgaaaagagatcagctgaccaaggatatccacagacaattggccaaagaagatgac
aatactgtatttgagcaggcaattgaaagtcttcaagcagaaggcctcagcctagagcaa
atagcgctaagcttggttaaaatgcaacttggtgaagccattgataagttcaaggaaatg
aacttcactcctgagaaagatcgtggcggaagagatgaccgaagatccaaaagagatcgt
ggagatagaggcgatagaggtactagaggtagatctggtgaaagaggagatcgtagtggt
agaagaggtgggaaaaaagaaagagaaccaaatatggctcgtcttttcctaaaccttggt
aaaaaagatcgaattcgtccaaatgacatcgtaggagccattgctggtgaaactggtgta
tctggtggaagtatcggtgaaattgatatttatgatagcttttcttttgtggacattcct
aaaaaagatgcaagtcatgttatcaatgtcatgaacaccaataccataaaaggtaaacaa
gtgaattttgagatttctaaaccttaa
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