Campylobacter porcelli: CSUIS_0485
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Entry
CSUIS_0485 CDS
T05900
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
camy
Campylobacter porcelli
Pathway
camy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
camy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CSUIS_0485 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
camy03021
]
CSUIS_0485 (rpoD)
Transcription machinery [BR:
camy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CSUIS_0485 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
MCR_beta_N
Motif
Other DBs
NCBI-ProteinID:
ARR00323
UniProt:
A0A1X9SVV2
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All DBs
Position
complement(484631..486487)
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AA seq
618 aa
AA seq
DB search
MSTAKEIFTQIEELFRENAKSYVTFEQLVRLFDKAPTAGMIKKIESIAELHKIQLTSAVE
AAKQKTIQEAKRSSTSDQQKSSDANLEDEFDLSSETDLLEWSRSDSPVRMYLREMGQIPL
LSKEEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFKSFDEEDN
EEEEDIEESYNEDEEIEDSKKQPKKLDKRAEKVIESFKALEKAKKDWLKIASKQNISVEN
EADLLSKLNLTFKKKVLKDKLMDLGPTSKLINEIVKSIETALKSDVDFDKELKRLEYRLP
MFSAELRKNHQQILKDITKLSKEDIISRVPEATMVSTYMEIKKLFQTKEASKTGFNLDPK
DLKNILDQIKKGKNISDDAKAKMAKSNLRLVVSIAKKYTNRGLPFLDLIQEGNIGLMKAV
DKFEYKKGFKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKINRKYIQEEGK
EPDVSIIAKEVGLSIDKVKQVIKITKEPISLEAPIGSEDDGKYGDFVEDKSSLSPMEQIL
KADLKEQIDEVLDQLNDREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAI
KKLKHPKVGRKLKNYIEG
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggccaaagagatatttacacaaattgaggagttatttagagaaaatgctaag
agctatgtgactttcgagcagctagttaggctatttgacaaagctcctactgctggaatg
attaaaaagatagaatctatagccgagctacacaaaattcagctcacaagtgccgttgaa
gctgccaaacaaaaaacaatccaagaagcaaaaagatcatctacttcagaccaacaaaaa
tcatctgacgcaaatttagaagatgaatttgacctaagtagcgaaacagatttgctagag
tggagtcgctcagatagtcctgttcgtatgtatctgcgtgaaatgggtcaaattccgctt
ttaagcaaagaagaagagattgaaattagcaaaaaaatcgagcttggcgaggatattata
attgacgcattttgctctgtgccatatctgatagattttatattagattataaagagcca
ttaatcaatagagagcgtcgtgtaaaagagctatttaagagctttgatgaagaggataac
gaagaagaagaggatatcgaagagagctacaatgaagatgaagagatcgaagatagcaaa
aaacagcctaaaaaacttgataagagagctgagaaggtaattgagagctttaaagcatta
gaaaaagccaaaaaagattggctaaaaatcgcttcaaaacagaatatctctgtggagaat
gaagctgatttattatctaaattaaatttaacatttaagaaaaaagttttaaaagataaa
ctaatggatttaggccctacaagtaagcttataaacgagattgtaaagtctattgaaaca
gcacttaagagcgatgtagactttgataaagagcttaaaaggcttgagtatagactacct
atgtttagtgctgaattaagaaaaaaccaccaacaaatcctaaaagatataaccaaatta
agcaaagaagatataatatctagagttccagaagctacgatggtttctacatatatggag
attaaaaagctatttcaaaccaaagaagcaagcaaaactggatttaatctagatccaaaa
gatcttaaaaatatcttagatcaaataaaaaaaggcaaaaatataagcgatgatgccaag
gctaaaatggctaaatcaaatttgcgtttagttgtaagtatcgctaagaaatataccaat
cgtggattgccatttctagaccttatccaagaaggcaatataggtcttatgaaggctgtg
gataaatttgagtataaaaagggatttaaattctccacatatgctacttggtggatacga
caagccattagcagagccattgccgatcaagctcgcactattagaattccaatccatatg
attgagactataaatcgcattaataaaataaatagaaaatatatccaagaagaaggcaaa
gagccagatgtatcaatcatcgcaaaagaggttggactaagcatagataaggtcaaacaa
gtaatcaaaatcacaaaagagccaataagcctagaagccccaataggtagcgaagatgat
ggaaaatatggagatttcgtagaggataaaagctctctaagcccgatggagcagatccta
aaagcggatttaaaagagcaaatagatgaagttttagatcagctaaatgatagagaaaaa
gcggtaattagaatgcgttttggcctgcttgaagatgagagtgatagaactcttgaagag
ataggcaaagagttaaatgtaactagagagcgtgtaaggcagattgagagctcagcgatt
aaaaagctaaagcacccaaaagttggtcgcaaactaaaaaattatatagagggataa
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