Campylobacter vicugnae: CVIC12175_0240
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Entry
CVIC12175_0240 CDS
T05727
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
camz
Campylobacter vicugnae
Pathway
camz03030
DNA replication
camz03430
Mismatch repair
camz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
camz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CVIC12175_0240 (dnaE)
03430 Mismatch repair
CVIC12175_0240 (dnaE)
03440 Homologous recombination
CVIC12175_0240 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
camz03032
]
CVIC12175_0240 (dnaE)
03400 DNA repair and recombination proteins [BR:
camz03400
]
CVIC12175_0240 (dnaE)
Enzymes [BR:
camz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CVIC12175_0240 (dnaE)
DNA replication proteins [BR:
camz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CVIC12175_0240 (dnaE)
DNA repair and recombination proteins [BR:
camz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CVIC12175_0240 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Iron_permease
Motif
Other DBs
NCBI-ProteinID:
ARR03389
LinkDB
All DBs
Position
224792..228778
Genome browser
AA seq
1328 aa
AA seq
DB search
MSLDFTHLHLHTEYSLLDGANKIKTLAKRLKEMNIKSCAITDHGNMFGAIEFYKGMRAEG
IKPIIGLEAYIHNSDDISSKESRYRFHLCLFAKNEIGYQNLMYLSSMSYIKGYYYYPRIN
KKLLKEHSDGLVCSSACLAGEVNFHLNLSERNLKRGAGGYEAAKAAALEYKDIFGDDFYL
EIMRHGIFDQQRIDNDIIRLSKETGIKLIATNDAHYTTKDSAIAQKIFVYISANKNFDES
VREQVLSEFYAKSPEQMSEIFADIPEVITNTQEIVQKCNLEIKLGDATPPNFKFTQEYAK
ARELALPNPTMEYDLDNDSALFEYECKEGLKKRLEFIDPSKHQIYKDRLDLEIKTIKNMK
FPGYMLIVADFINEAKKRGIPVGPGRGSAAGSLVAYALRITDLDPIPYNLLFERFLNPER
ISMPDIDVDFCQNRRGEVIDYVIQKYGQYNVAQVATFGKLLAKGVIRDVARVMGMPYSDA
DAMAKLIPDELGIALQGHINKKGEFEPGAFEKEPKIGELIESNELARSVWKYACELEGLN
RNPGMHAAGIVISNEELWKKAPLWKQSNAEDGHYVTQYTKDYLEDVDLIKFDFLGLKTLT
VIDNAIKLVKARFDKDILWERIDFNDPKTYETIQSGNTLGIFQIESSGMQKLAAKLKPDC
FEDVIAMIALYRPGPLNSGMVDDFIDIKHGKKSVEYAFEALRPILEPTYGVIVYQEQVMQ
VVQTVGGFSLGGADLVRRAMSKKKEDEMLRLKTEYLEGAAKNGFDTTKADALFELIMKFA
EYGFNKSHSAAYALITFQTAYLKTYYPAEFMAALLSSEENNADKITKYIEEIRRLDIELL
PPSVSKSKSEFSVISKDGKDAIIYGLGAIKGVGGSAIEEIIAIRQEGIDTLEDLVSKSDC
TLVNKRVYESLIKSGALDEFGYNRKTLVQNIEYLTEQSKKSSDIKKEAEFSLFGDDESMN
EIRLNLNIAQDEFSQRELLGFEQEYLGVYISGHPLDEFKSNISKIPHTNSSEFDSIEDSS
EIVVIGKVEDISVKLTKSGNKMGIITILDMHGSIEATVFAQMQKIETLSKDELEKPLVFK
MVLNKDDQQIRLKVNEIYTLEEAQNTKITLKSNKITAEELEQNKEYFNSIKHSTILDVLK
SAKNGEHLIIAKINNISIKDTKSGNKMAVISVADKSSNADMFAFDVAYTQASQIDDTNRL
YALKITPPRDANSKMIINQIIDIDEAKNGDIALRNAPRKKSQQDSIQTTKQAVSLVDKLE
IDLELSHLNKSKINEIYQLAYRHNAKSGEKKSLLLRVVDENKNQVMLFTTEFSVSDEFEN
EVKMLLVG
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgagtttggattttacccatctgcatttacatactgagtattcacttttagatggagct
aataagattaaaactttagctaaaagactaaaagagatgaatataaaatcttgtgctatt
actgatcatggcaatatgtttggggcaattgagttttataaagggatgagagctgagggg
ataaagccaattataggtcttgaggcctatattcataatagtgatgatataagctctaaa
gagagtagatatagatttcatctatgtctatttgccaaaaatgagataggctaccaaaat
ttaatgtatttaagctcgatgagttatataaagggctattattactatccaaggataaat
aaaaagctcttaaaagagcatagtgatggtttggtttgtagctcggcttgtttggctggt
gaggttaattttcatctaaatttaagtgagagaaatttaaaaagaggcgcaggtggttat
gaagcagcaaaggctgcagcgctagaatataaggatatttttggtgatgatttttatctt
gagattatgcgtcatgggatatttgatcagcaacgcatagataatgatattattagatta
tctaaagagactggtattaaattaatagctacaaatgatgctcactacaccactaaagat
agcgctatagctcaaaagatatttgtctatatatctgcaaataaaaattttgatgagagt
gtaagagagcaggtattaagcgaattttatgctaaatctcctgagcagatgagtgagatt
tttgctgatattccagaggttataaccaatactcaagagatagtccaaaagtgtaatcta
gagataaagctaggagatgcaactccgccaaattttaaatttactcaagagtatgctaag
gctagagagttagccttgccaaatccaactatggagtatgatctagataatgatagtgct
ttatttgagtatgagtgcaaagaggggctaaagaagcgtttagaatttatcgatcctagc
aaacatcaaatttataaagataggctagatttagagattaaaactatcaaaaatatgaag
tttccaggatatatgcttatcgttgctgattttatcaatgaagctaaaaaacgcggaatt
ccagtaggtccagggcgtggctcagctgctggtagcttggtagcctatgcacttcgcatt
actgatcttgatcctataccttataatttgctatttgagaggtttttaaacccagagcgt
ataagtatgcctgatattgatgtggatttttgtcaaaatcgcaggggtgaagtaattgat
tatgttatacaaaagtatggtcaatataatgtggctcaagtagcaacatttggtaaatta
cttgctaagggtgttattagagatgtagctagagttatgggaatgccatattctgatgct
gatgcgatggcaaaattaatccctgatgaattaggtattgcactacaaggtcatatcaat
aaaaagggcgagtttgaaccaggagcttttgaaaaagagccaaaaattggagaattaata
gagagtaatgaactagcaagaagcgtgtggaagtatgcttgtgagcttgaaggattaaat
agaaatccaggtatgcacgctgctggtatagtaattagcaatgaagaactatggaaaaaa
gcaccgctatggaagcaaagtaacgccgaagatggccactatgtaactcaatatactaaa
gattatcttgaagatgtagatcttattaaatttgactttttagggcttaagactctaaca
gtaattgataatgctataaagctagttaaagctaggtttgataaagatattttgtgggag
agaattgactttaacgatccaaaaacatatgaaactatacaaagcggtaatactcttggc
atattccaaatagagtcaagtggtatgcaaaaactagctgcaaaattaaagccagactgc
tttgaagatgttattgcgatgattgctttatatcgtccagggccacttaactcaggtatg
gtagatgattttatagatatcaaacatggcaaaaagagtgtagagtatgcatttgaggca
ttgcgtccaattttagaacctacatatggggttatagtttatcaagaacaagttatgcaa
gtagtgcaaactgtaggtggatttagccttggtggtgctgatttagttcgtagagcaatg
agcaagaaaaaagaagatgagatgcttagattaaagactgagtatcttgaaggtgcagca
aaaaacggctttgatactactaaagctgatgctctttttgaattgattatgaaattcgca
gagtatggatttaataaatctcactctgcagcttatgcacttattacattccaaacagca
tatttaaagacatattatccagctgaatttatggccgcacttttaagtagtgaagagaat
aatgctgataagataactaaatatattgaagagattcgtcgccttgatatagagcttttg
ccacctagtgtaagtaagagcaaaagtgaatttagcgttattagcaaagatggtaaagat
gctattatttatggtcttggtgccataaagggtgtaggcggttcagcaattgaagagatt
atagccattaggcaagaagggatagatactttagaggatttagtatctaagagcgattgt
actttagtaaataaacgcgtatatgaatcgcttataaaatctggtgctttagatgaattt
ggctataacagaaaaactttagttcaaaatattgagtatctcactgaacaatctaaaaaa
agtagcgatattaaaaaagaggcagaattctctttatttggtgatgatgagagtatgaac
gagataagactaaatttaaatatcgctcaagatgaatttagccagcgtgagcttttagga
tttgaacaggagtatttaggtgtatatattagcggccatcctcttgatgagtttaagtct
aatatatcaaagataccacatacaaattcatctgaatttgatagcatagaagatagtagc
gagatagtagtaattggtaaggtagaagatatatcagtcaaactaaccaaatcaggtaat
aaaatgggtataatcactatacttgatatgcacggaagcatagaagcaacagtatttgct
caaatgcaaaaaatcgaaacactttcaaaagatgaactagaaaaaccacttgtatttaag
atggtattaaataaagatgatcagcaaattcggctaaaagtaaatgaaatatacacttta
gaagaggcacaaaatacaaaaattactctaaaatcaaacaaaattacagctgaagagtta
gaacaaaataaagagtattttaactctattaagcactctactatcttagatgtgctaaaa
agtgctaaaaatggcgaacatctaataattgctaaaattaataatataagcattaaagat
acaaaatcaggcaataaaatggcagttattagcgtagctgataaaagctcaaatgccgat
atgtttgcttttgatgtagcgtatactcaagctagccagattgacgatactaatagatta
tacgctcttaaaatcactcctccacgagatgcaaactcaaaaatgattataaatcaaata
attgatattgacgaggctaaaaatggagatatagccctaagaaacgcacctagaaaaaaa
tcccaacaagactctatacaaactactaagcaagcagtatcattggtagataaattagag
attgatttagaattaagccatttaaataaaagtaaaataaatgaaatttatcaactcgct
tataggcataatgctaaatctggagagaagaagagcttgcttttaagagtagtagatgaa
aataaaaatcaagtaatgctatttactaccgaatttagcgtaagtgatgaatttgaaaat
gaagtaaaaatgcttttagttggataa
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integrated database retrieval system
