KEGG   Campylobacter vicugnae: CVIC12175_0464
Entry
CVIC12175_0464    CDS       T05727                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
camz  Campylobacter vicugnae
Pathway
camz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:camz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CVIC12175_0464 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:camz03021]
    CVIC12175_0464 (rpoB)
   03400 DNA repair and recombination proteins [BR:camz03400]
    CVIC12175_0464 (rpoB)
Enzymes [BR:camz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CVIC12175_0464 (rpoB)
Transcription machinery [BR:camz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CVIC12175_0464 (rpoB)
DNA repair and recombination proteins [BR:camz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CVIC12175_0464 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RnfC_N
Other DBs
NCBI-ProteinID: ARR03604
UniProt: A0ABZ2E8U4
LinkDB
Position
429284..433423
AA seq 1379 aa
MLNSLYSGNRLRVDFSNVAKEIDVPNLLQLQKKSFDHFLNLDNSQTESGIEKVFKSIFPI
HDPQNRLSLEYVSSEIGKPRYTIRECMERGLTYSVNLKIKIRLIVHDRDEKTGEKIGVKD
IKEQEIFVREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESPTVVNKLIYTAQII
PDRGSWLYFEYDTKDVLYVRINKRRKVPITILFRALGYKKQDIVKLFYPMQTLKIQNNKF
LVEFNPDDFTGRVDYDIKDEEGNILHQAGKRLTKKKADKLIEDGVKFIEYPLEILVNRYL
ASPIIDKDSGEVLYDTLTQLDESKIARIANEQDSIEIANDLANGVDDAIINSFLQDYETL
KLLKQTEGVEDENDLAAIRIYKVMRPGEPVVKEAARSFVNDLFFNPERYDLTKVGRMKMN
HKLGLNAPDYVTVLTNEDIIKTAKYLIKVKNGQGHIDDRDHLGNRRIRSIGELLANELHL
GFVKMQKAIRDKFTSLSNNIDEIMPYDLVNPKMITTTIMEFFTGGQLSQFMDQTNPLSEV
THKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSTYAKVNDL
GFVESPYRKVENGRVTNEIVYLTATQEEGHIIAPASTILDENGMISEDLIEVRQDGEMIL
AKRDDVTLIDLCSGMVMGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKSTAPIVGTGM
EAIVARDAWEAIKARRGGVIEKVDNKNIFILGEDENGPYIDQYTMEKNMRTNQNTTFSQH
PIVKKGQKVEAGQIIADGSSMDQGELAIGKNALIAFMPWNGYNYEDAIVMSERMIRTDAF
TSVHIYEKEIEARELKDGVEEITRDIPNMKEEEIEHLDESGIVRIGTHIKPGMILVGKVS
PKGEVKPTPEERLLRAIFGEKAGHVVNKSLYAPASMEGVVIDVKIFTKKGYEKDSRSFKA
YEDEKNILEKEHHDRLLMLDREEMLRVTALLANNELQSDLEVGKTIYVKGQKIQKEYLAN
INRFTLNSYVKSFSKDVQKSYEDMKAYFQNEKKKLKDEHDAKLEILEKDDILPSGVVKLV
KVYVATKRKLKVGDKMAGRHGNKGIVSNIVPDVDMPYLPDGRSVDIVLNPLGVPSRMNIG
QILESHLGLVGMKLGEQIQEIFDRKSKEWITELRAKMIEIADVSRLMDAKAILEKIDDEK
LIEYARDWASGVRFATPIFEGVKPEEFNKLFEMAKIDMDGKTELYDGRTGSKMAERVNVG
CMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALSGGQRFGEMEVWALEAYGAAHTLR
EMLTVKSDDVEGRWLAYKALTRGENVPSTGIPETFFVLTNELKSLALDVEIYDEDDNNE
NT seq 4140 nt   +upstreamnt  +downstreamnt
atgctaaatagcctttattctggaaatcgtcttagggtagatttttctaatgtcgctaaa
gagattgatgttccaaatttattacaattacaaaaaaagagttttgatcattttttaaat
cttgataattcacaaactgaaagcggaatcgaaaaagtatttaaatctatttttcctatt
cacgatccgcaaaatagactttcgcttgaatatgtcagtagtgaaatcggtaagcctaga
tatacaattagagagtgtatggaaagaggtcttacatactctgtaaatttaaaaataaaa
attagattaatagttcacgatagagatgaaaaaacaggtgagaaaatcggagtaaaggat
atcaaagaacaagagatatttgttcgtgaaattcctttaatgactgatagaatttcattt
attattaatggtgttgagagagttgttgttaatcaactacacagaagcccaggtgttata
tttaaagaagaagagagtcctacagttgtaaataaacttatctatactgctcagattatt
cctgatcgtggctcttggttgtattttgaatatgatactaaagatgtattatatgtgcgt
attaataaacgccgtaaagttcctattactattttatttagagcattaggatacaaaaaa
caagatattgttaaattgttttatcctatgcaaactttaaaaattcaaaataataaattc
ttagtagagtttaatccagatgattttactggtagagttgattatgatattaaagatgaa
gagggtaatatcttacatcaagctggaaaaagacttactaagaaaaaggctgataagctt
atagaagatggtgttaaatttattgaatatccgcttgaaatactagtaaatagatatcta
gctagcccaattattgataaagatagtggtgaggttttatatgatactcttactcaactt
gatgagagtaagattgctagaattgcaaatgaacaagatagcattgagattgcaaatgac
ctagcaaatggagttgatgatgctattattaactcattcttgcaagattatgagactctt
aaacttcttaaacaaacagaaggcgtagaagatgaaaatgatctagccgcaattagaatt
tataaagttatgcgtccaggcgagcctgtagttaaagaggctgctagaagttttgttaat
gatctattctttaatccagaaagatatgacctaactaaagttggtcgtatgaagatgaat
cacaagcttggattaaatgcgcctgattatgttacagtattaacaaatgaagatatcata
aaaactgctaaatatctaataaaagttaaaaatggtcaaggccatatagacgatagagat
cacttaggtaatcgccgtattcgctctattggcgagcttttagctaatgagcttcattta
ggatttgtaaaaatgcaaaaggctattagagataaatttacaagcctaagcaataatatt
gatgagattatgccatatgatcttgtaaatcctaaaatgatcactactactattatggaa
ttttttaccggtggtcagttaagtcaatttatggatcaaactaatccacttagcgaagtt
actcataagcgtagattatcagcccttggtgaaggcggtttagttaaagaaagagctggt
tttgaggttcgtgatgttcatcctactcattatggtagaatatgtccagttgagacgcca
gagggtcaaaatatcggtcttattaataccctttctacatatgctaaagtaaatgattta
ggctttgttgaatctccatatcgtaaagtagaaaatggtagagtaacaaatgaaattgtc
tatcttacagcaactcaagaagagggtcatattatcgctccagcatctacaatcttagat
gagaatggtatgattagcgaggatttaatagaggtgcgccaagatggtgaaatgatcctt
gcaaaaagagatgatgtaacactaattgacctttgtagtggtatggttatgggggtagct
gcttcattgattccattccttgaacacgatgatgctaaccgtgcacttatgggttcaaat
atgcaacgccaagctgtgccccttttaaaatcaactgcacctattgtaggtacaggcatg
gaagctattgtagcgcgtgatgcttgggaagctattaaagcaagacgtggcggtgtaata
gaaaaagttgataataaaaatatatttattctaggcgaagatgaaaatggtccatatatt
gatcaatatacaatggaaaaaaatatgcgtaccaaccaaaatacgacatttagccaacac
ccaattgtaaaaaaaggacaaaaagtagaagctggtcagataatcgctgatggttctagt
atggatcaaggtgaactagcaattggtaaaaatgccttaattgcctttatgccgtggaat
ggatataactatgaagatgctattgtaatgagcgagagaatgattcgcacagatgcattt
actagtgttcatatctatgaaaaagagattgaagctagagagctaaaagatggcgtagaa
gagatcactagagatattcctaatatgaaagaagaggagatcgagcatctagatgaaagc
ggtattgtaagaatcggtactcatattaagcctggtatgattttagtaggtaaagtatct
ccaaaaggtgaagttaagccaactccagaagagagacttctaagagcaatctttggcgaa
aaggctggccatgtagtaaataaatccctatacgctccagcaagcatggaaggcgtggta
attgatgttaaaatctttactaaaaaaggctatgaaaaagactcaagatcatttaaagcc
tatgaagatgagaaaaatatcttagaaaaagagcatcacgatagacttttaatgcttgac
cgagaagagatgttaagagtaactgctttattagctaataacgaactccaaagcgattta
gaagttggtaaaactatatatgtaaaaggccaaaagatacaaaaagagtatcttgctaat
ataaatagatttactctaaattcatatgtaaaaagctttagtaaagatgtacaaaaaagc
tatgaagatatgaaagcttacttccaaaatgagaagaaaaaattaaaagatgagcatgat
gctaagcttgaaattttagaaaaagatgatattttaccaagcggagtagtcaaacttgta
aaagtttatgtagctactaagcgtaagctaaaagttggagataaaatggctggtcgccat
ggtaataaaggtattgtatcaaatatcgttccagatgtagatatgccatatcttccagat
ggtagatcagtagatattgttttaaatccactaggtgttcctagtcgtatgaatattggt
caaattttagaaagccacttaggtcttgtaggtatgaagcttggtgagcaaattcaagag
atttttgatagaaaatcaaaagagtggataacagaattaagagctaaaatgattgagata
gctgatgtatcaagattgatggacgctaaagcgatcttagaaaaaattgatgatgagaag
ttaatagaatatgcaagggattgggcaagcggtgtaagatttgctactcctatatttgaa
ggtgttaagcctgaagagtttaataagctatttgaaatggctaagattgatatggatggc
aaaactgagctatatgatggccgcaccggatcaaaaatggctgaacgcgtcaatgtcggt
tgtatgtatatgttaaaacttcaccacttagttgatgaaaaagttcatgctagaagcact
ggtccatatagtctagtaacacaacaaccagttggtggtaaagcattaagcggtggtcaa
agatttggtgagatggaggtttgggctttagaagcttatggtgctgcccatacacttcgc
gagatgctaactgtaaaatctgatgatgttgaaggaagatggctagcttataaagcatta
actagaggtgaaaatgtcccaagtactggtattccagagacattttttgttttaacaaac
gagctaaaatctctagcactagatgttgagatttacgatgaggatgataataatgagtga

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