Cyanobacterium aponinum: Cyan10605_0021
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Entry
Cyan10605_0021 CDS
T02376
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
can
Cyanobacterium aponinum
Pathway
can03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
can00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyan10605_0021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
can03019
]
Cyan10605_0021
Messenger RNA biogenesis [BR:
can03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cyan10605_0021
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AFZ52182
UniProt:
K9Z0F0
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All DBs
Position
27368..29302
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AA seq
644 aa
AA seq
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MYSFYSSQKNQTNMKDKKVYTIKGRRTRKTITTENIAPTPAEKSNSNNQPHVKIVPLGGL
HEIGKNTCIYEYEDEMILVDAGIGFPTDGMHGINVVLPDMTYLKENNHKIKAMIATHGHE
DHIGGIPYHLKQVDFPLIYGPRLAMSLLSDKLEEAGLLEKTKIHTVSPREVVKIGKHFRV
EFIRNTHSIADSFTLAIHTPIGVLIHTGDYKVDHTPVDGEYFDFHRLAQLGEEGVLCLLS
DSTNSEVPGFTPSEMSVYPGLDRAFTQAQGRLMVTTFATSVHRINIILALAMKHNRKVGV
VGRSMLNVIAHARKLGYIKCPDHIFVPLRTLRSLPDDQILILCTGSQGEKFAAMTRISRG
EHPHIKVREGDTIVFSANPIPGNTIAVVNTIDRLMIQGANVIYGKQAGVHVSGHGCQEDQ
KLMLALTKPKFFVPVHGEHRMLVKHSETAQSVGVPKENIVIIDNGDSIDLTVDSIAKGEK
VPSGIQLVDTAGVVHEHVMEERQQLAEDGVITIAAVIDSKGNLLVEPQVNLRGVVCTMEV
PSLERLITRTVDRTISDRIKSNLLLSEGDNINWNSIRIEVETNLSRVIQREINSEPLVIF
ILQVQEGITNNNGQINNESLSDSDDNDEGDGKFTRRRRKATANV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
ttgtattcattttattctagtcaaaaaaatcaaaccaatatgaaagacaaaaaagtatat
accattaaaggcagacgcaccagaaaaaccataaccacagaaaacattgctcctacccct
gcggaaaaaagcaattctaataatcaaccccatgtaaaaattgttcctttagggggatta
cacgaaatcggaaaaaatacctgtatctatgaatatgaagatgagatgattttagtggat
gcgggtatcggttttcctacggatggaatgcacggtattaacgtggttttacctgatatg
acttatttaaaggaaaataaccacaaaattaaggcaatgattgccactcacggacacgaa
gatcatatcggtggtatcccctaccatttaaaacaggtggattttcccttgatttatggt
cctcgtctagccatgtctttactttctgataaattagaagaggctggacttttagaaaaa
accaagattcatactgtttcccctagagaagtagttaaaattggtaaacattttcgagtg
gaatttatccgcaatacccactccatcgctgatagtttcaccttggcaattcatacccct
attggggttttaatccacacaggagattataaagtagatcatacccccgttgacggagaa
tatttcgattttcaccgtttagcccaattaggagaagagggagtattatgcttactgagt
gactctactaactccgaagtacccggattcaccccctcagaaatgtcggtttatcccggt
ttagatcgagccttcactcaagctcaagggcgtttaatggtgacaacctttgccacttcc
gttcatcgtatcaatatcatccttgctttagctatgaagcataaccgtaaagtaggagta
gtggggcgatcgatgctgaatgtgattgcccacgcccgtaaattaggttacatcaaatgt
ccagatcatatatttgtacctttaagaactttacgctctttacccgatgaccaaatatta
atattatgtacagggtctcaaggggaaaaatttgcggcgatgactcgtatttcacgggga
gaacatccccatattaaagtaagagaaggagatacgatcgtcttttctgctaatcctatt
cccggtaacaccattgccgtagtaaatacaattgaccgccttatgattcaaggggcaaac
gttatttatggtaaacaagcaggagtacacgtttcaggtcatggttgtcaagaagatcaa
aaattgatgttagctctaaccaagccgaagttttttgtgcctgtccacggtgaacataga
atgttagtaaaacactcagaaaccgctcaaagtgtaggagtgcctaaagaaaacattgtc
atcatcgataacggtgatagcatcgatctaacggtagatagcattgctaaaggagaaaaa
gtaccttcaggtattcaattagtcgatactgctggggttgttcatgaacacgtaatggaa
gaaagacaacaattagctgaagatggtgttattactattgccgcagtgattgactctaaa
ggtaatttattagtagagcctcaagttaatttacggggggttgtctgcacgatggaagta
cccagtttagaaaggttgattactagaacagtggatcgtacaataagcgatcgcatcaaa
agtaacttactcctaagtgaaggagacaatatcaactggaatagtattcgcattgaagtc
gaaactaacctcagccgtgtcattcaaagagaaatcaatagcgaaccattggtcattttt
atcttacaagtccaagaagggataactaataacaacggacaaataaacaatgaatctctt
tctgatagtgatgataatgacgaaggagacggtaaatttactcgccgtcgtcgcaaagct
actgctaatgtctag
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