Cyanobacterium aponinum: Cyan10605_1114
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Entry
Cyan10605_1114 CDS
T02376
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
can
Cyanobacterium aponinum
Brite
KEGG Orthology (KO) [BR:
can00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
can03016
]
Cyan10605_1114
Enzymes [BR:
can01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cyan10605_1114
Transfer RNA biogenesis [BR:
can03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cyan10605_1114
Prokaryotic type
tRNA splicing ligases
Cyan10605_1114
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DAHP_synth_1
DUF4514
CP2
Motif
Other DBs
NCBI-ProteinID:
AFZ53236
UniProt:
K9Z221
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All DBs
Position
1348788..1349969
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AA seq
393 aa
AA seq
DB search
MAYKPLTLSTPKPVLSWAGHDLASQEMQMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKDAIIPAAVGVDIGCGMCAIKTPFQANQLEGKLKKIRQEIEAIIPVGFNENKEVETK
VTNWQGWRNFSDLHSGVQRLETKALKQMGSLGGGNHFIELCLDTDEQVWLMLHSGSRHIG
NKLAECHIHTGKELAKLAGLKLPDPDLAYFVANTPEFDAYWRDLQWAQNYARFNRDVMMS
RFKGIVEKYLAGGKPCKPLLKVNCHHNYAEKEIHFGEDVYVTRKGAVRATQEDYGIIPGS
MGAKSFIVKGKSNHDSFCSCSHGAGRKMSRAKAKKEFDVADLIQQTEGIECRKDSGVIDE
IPSAYKPIEEVMNQQTDLVEIVATLKQVICVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcttataaacctttaactttatcaactcctaaacccgttttgtcatgggctggtcat
gatttagccagtcaagaaatgcaaatggcgaaaaatgtggcttctttaccttttgttttc
aagcacgttgcattaatgcctgatgtacatttaggaaaaggggctttagtgggttcggtt
attgccacgaaagatgcgattatacctgcggcggtgggagttgatattggttgtggaatg
tgtgcgattaaaacaccttttcaggcaaatcaattggaaggaaaattaaaaaaaattcgt
caggaaatagaggcaattatccctgtaggttttaatgaaaataaggaagtagaaacaaaa
gtaactaattggcaaggatggagaaattttagtgatttacattcaggggtgcaaagatta
gaaactaaagcccttaaacaaatggggtctttaggaggaggaaatcactttattgaatta
tgcttagataccgatgagcaagtatggttaatgttacattctggttctcgtcatattggc
aataaactggcagaatgtcatattcatacagggaaagagttggctaaattagcaggttta
aaacttcctgatcctgatttagcttattttgtggcgaatactcccgaatttgatgcttac
tggagagatttacaatgggctcaaaactatgcccgttttaatcgggatgtgatgatgagt
cgctttaaaggtattgttgaaaaatacttagcaggaggtaaaccttgtaaacctttacta
aaggttaattgtcatcacaactatgcagaaaaagaaattcattttggtgaagatgtttat
gttacccgcaaaggtgctgtaagggcaactcaagaggattatggtatcatacctggttca
atgggagcaaagtcctttattgtcaaaggtaagagtaatcatgacagtttttgtagttgt
agtcatggggcaggaagaaaaatgtctcgggcgaaagcaaaaaaagaatttgatgttgcc
gatttaattcaacaaactgaaggtattgagtgccgtaaggatagtggggttattgatgaa
attcctagtgcctacaaacccattgaagaagtaatgaatcagcaaaccgatttagtggaa
atcgtggctaccttaaagcaagttatttgtgttaaaggataa
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