Cyanobacterium aponinum: Cyan10605_1935
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Entry
Cyan10605_1935 CDS
T02376
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
can
Cyanobacterium aponinum
Pathway
can03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
can00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyan10605_1935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
can03019
]
Cyan10605_1935
03009 Ribosome biogenesis [BR:
can03009
]
Cyan10605_1935
Enzymes [BR:
can01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Cyan10605_1935
Messenger RNA biogenesis [BR:
can03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cyan10605_1935
Ribosome biogenesis [BR:
can03009
]
Prokaryotic type
rRNA processing factors
Cyan10605_1935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AFZ54031
UniProt:
K9Z4B3
LinkDB
All DBs
Position
complement(2323872..2325926)
Genome browser
AA seq
684 aa
AA seq
DB search
MPKQIIIAEKNHIAAVFAEDQIQELVVATGNQQVGDIYLGTVENVISGIDAAFVNIGDAE
KNGFIHVTDLGPLRLKRSAGAITELLTPHQSVLVQVMKEPTGTKGPRLTGNISLPGRYLV
LMPYGKGVSLSRRIKNDNERNRLRALAILLKPAGMGLLVRTEADGKGEDAIIEDLEFLKK
QWEKIQQEANTLNPPALLNRDDDFIQRVLRDMYSDDVNRIVVDSDDAVRRVKKQLNNWGS
GKNPHGLLIDSHQDSRSILDYFRVNSAIKEALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTHSATSRETVLWTNTEAAIEIARQLKLRNIGGVIVVDFIDMDSRRDKLKLLEHFNRVL
QSDKARPQIAQLSELGLVELTRKRQGKNIYELFSQPCSHCGGLGLVGHFPGHYDLESLTS
NNYYQPPQISKTEKPILDEKIISLDDFSSDNDELDLVNHPSYQESNNGNSRRRRRRRENG
VKEEPILAGSNGNGGETESKPERKERSLLSRSLRRDESQWEKVVVEMTPAEQDVYAFMGV
SPLLRLEQEFKDPKSVLVYVRNPEEQENIENIDTATEKNQQEDIEIADDEDKNAIEVAPA
AEVIFPQGKETMVNELEIDVQVGEVDEQIELEEDDHFEESSKEVFDGDNSETAEETITDA
IIKEASQSDRPVVRTRRRRTSRNS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaataataattgcagaaaaaaatcatatagcggcagtatttgctgaagat
caaattcaagaattagtggttgctaccggaaaccaacaggtaggagatatttatttagga
acagtcgaaaatgttatttcgggtattgatgcggcttttgtcaatataggcgatgcggaa
aagaatggttttatccatgttactgatttgggtcctttacgattaaaaagaagtgcaggg
gcgattactgaattattaactcctcatcaatccgtattggttcaagtaatgaaagaacct
acaggaacaaaaggacctcgtttgacaggtaatattagtttaccggggcgttatttggtg
ttaatgccttatggaaagggagttagtctttctcgacgtatcaagaatgataatgagcgt
aatcgccttagagcattagctattcttttgaaacctgcggggatgggtttgttggttcgc
acagaagctgatggtaaaggagaagatgcgattattgaggatttggagtttctcaaaaaa
cagtgggaaaaaatccaacaggaagcgaataccttaaatcctcctgcgttgttgaatcga
gatgatgatttcattcaacgggttttgcgagatatgtatagtgacgatgttaatcgtatt
gtagttgattctgatgatgcggtaagaagggtcaaaaaacagttaaataattggggaagt
ggtaaaaatcctcatggtttattaattgactctcatcaagatagccgttctattttagat
tatttccgagttaatagtgccattaaagaagcattgaaaccgagggttgatttaccttct
gggggatatattatcattgaacccacagaagcattaacggtaattgatgttaactctggc
tcttttactcattcagcgacttcccgagaaacggttttatggactaatactgaagctgcg
atcgaaattgctcgtcagttaaaattacgtaatattggtggggtgattgtggttgacttc
attgatatggattctcgccgagataaattaaaattgttagagcattttaaccgagtttta
caaagcgataaggctagacctcaaatcgcacagttatcagaattaggattagtggaacta
actcgtaagcgtcagggtaaaaatatttatgaattatttagtcaaccctgtagtcattgt
ggtggtttaggcttagtgggtcatttccccgggcattatgatttagaaagtcttacttct
aataattattatcaacctcctcaaattagcaaaacagagaagcctattctcgatgaaaaa
attatttctcttgatgattttagtagcgataatgatgagttagatttagttaatcatcct
agttatcaagaaagcaacaatggtaatagtcgtcgccgtcgtcgtcgtcgagaaaatggg
gtgaaagaagagcctattttagcgggaagtaatggtaatgggggagagactgaaagtaag
cctgaaagaaaagagcgtagtttattatctcgttctttacgcagagatgaaagtcagtgg
gaaaaagtggtagtagaaatgactcctgcggagcaagatgtttatgcttttatgggggtt
tctcctttactccgtttagaacaagaatttaaagaccctaaatcggttttagtttatgtg
cgtaatccagaggagcaggaaaatatagaaaatatagatactgccacggaaaaaaatcag
caagaggatatagaaatagctgatgatgaggacaaaaatgcgatcgaggtagctcccgcc
gccgaggttattttcccccaagggaaggaaacgatggtaaatgaattagaaattgatgta
caagtgggagaagtggatgagcaaatagaattagaggaagatgaccactttgaggaaagt
tccaaagaagtctttgatggtgataatagtgaaactgctgaagaaactattactgatgcc
attataaaagaggcgtcacagagcgatcgccccgttgtcagaacccgtcgtcgtcgcact
tctcgtaattcttga
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