Cyanobacterium aponinum: Cyan10605_2169
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Entry
Cyan10605_2169 CDS
T02376
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
can
Cyanobacterium aponinum
Pathway
can03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
can00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyan10605_2169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
can03019
]
Cyan10605_2169
03009 Ribosome biogenesis [BR:
can03009
]
Cyan10605_2169
Enzymes [BR:
can01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cyan10605_2169
Messenger RNA biogenesis [BR:
can03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cyan10605_2169
Ribosome biogenesis [BR:
can03009
]
Prokaryotic type
rRNA helicases
Cyan10605_2169
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFZ54255
UniProt:
K9Z6S4
LinkDB
All DBs
Position
complement(2604622..2606097)
Genome browser
AA seq
491 aa
AA seq
DB search
MTISFSSLGLSESLVNQLEKIGFVTPTKIQSLAIPELLSGRDVVGQSQTGTGKTAAYSLP
ILDSIDRSSKDVQALILTPTRELAQQVAESLKDFIARGDRTYVLTVYGGQSIERQIRFLE
KGSHIVVGTPGRIIDLLNRKNLTLDSLRYAVLDEADEMLSMGFIDDVKEILSQTPKSRQT
ICFSATMPKEIQYLVKEFMNDPINATGEKPQDTPSRIDQCVYMVPRGWSKIKTIQPILEI
EDPQSGIIFVRTKRTASELTTKLQEAGQSVDEYHGDLSQSQRERLIQRWRDGKIKLVVAT
DIAARGLDVSDLTHVFNFDLPDNTETYIHRIGRTGRAGKEGKAIALVEPSDRRFLRQIER
RLNQTIRVENVPNRSTVEAKRMEKLTEQIKESLAGERLASFLPLVKELHEDYDPTAIAAA
TLQILYDRDCPSWLQQDWDVPPPATPKPYIKKGKGGRTKYGSRGADSFDRQNKYKGKPKR
SYNRSVKLNNR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgacaatttcattttccagtttaggactatccgaatccttagttaatcaactagaaaaa
atcggttttgtgactcccaccaaaattcaatcattagcaattcccgaattattatcaggg
cgtgacgtagtagggcaatcgcaaactggtacaggtaaaacagccgcttattctctacct
atcttagatagcattgatcgcagttccaaagatgttcaagccttaattttgactcccacc
agagaattagctcaacaagtagctgaatctttaaaggattttatcgccagaggtgacagg
acttatgttctaactgtttatggtggtcaatccatagagcgtcaaattcgctttctcgaa
aaaggttctcacattgttgttggtactccggggcggattatcgatctactcaaccgtaaa
aatcttacgttagattctcttcgctatgcagttttagatgaagcggacgaaatgttaagc
atgggctttattgacgatgtaaaagagattctttctcaaactcctaaatctcgtcaaacc
atttgtttctcggcaactatgcccaaagagattcaatatctggtaaaagagttcatgaat
gatcctatcaatgctacaggagaaaaacctcaagatacaccttctcgcattgaccagtgt
gtgtacatggtgcctcgtggttggtctaaaattaaaactattcaaccaatccttgaaatt
gaagatcctcaaagtggcattattttcgtgagaactaagcgcactgcgtctgagctaacg
actaaattacaagaagcgggtcaaagtgtagatgaataccatggcgatttaagccaatct
caacgggagcgtttaattcaacgctggcgtgatggaaaaattaagttggtagtggctaca
gatattgccgccagaggtctggatgtatctgatttaacccacgttttcaacttcgattta
ccagataataccgagacttatattcaccgtatcgggcgtacaggaagggcaggaaaagag
ggtaaagctattgctttagttgaaccaagtgatcgccgttttttacgtcaaatcgagcgt
cgtttaaatcaaaccattcgggtggaaaatgtccccaatcgctctacggtagaagcgaaa
agaatggagaaacttacggaacaaattaaagagtctttagcgggtgaaaggttagcttct
ttcttacctttagttaaagaactacatgaagattatgacccaactgcgatcgcagccgct
acgttacaaatattatatgatcgagactgtcctagttggctacagcaagattgggatgtt
ccccctcctgcaacccctaaaccttatatcaaaaaaggtaaaggaggacgtactaaatat
ggtagtcgtggtgctgatagcttcgatcgtcaaaataaatacaaaggtaaacctaaacgt
agttataaccgctcagtaaagctaaataaccgataa
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