Clinocottus analis (woolly sculpin): 137779322
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Entry
137779322 CDS
T10471
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137779322 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cana03041
]
137779322 (prpf4)
Spliceosome [BR:
cana03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
137779322 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
NBCH_WD40
Beta-prop_EML
PRP4
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Ge1_WD40
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
Beta-prop_HPS5
WD40_like
WD40_RFWD3
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
137779322
NCBI-ProteinID:
XP_068423065
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MSDDEDVAPAPKRTRVFYGSLEEKERERLSSEAGRGGDAVKAGIKAGNINLSSGETLELE
ERVSERQNDALAAFEQRRRARQITVSTDDAEVKAGLRALGEPIILFGEGPADRRERLRGV
LSVVGPDALKKSRRDEERAKRSQDECQQTWYHEGSASLKDARLWLAKYSLPRAITRLEAA
RAYREVAEATRAIRQQELQNSLRNLNNFCSQIGDDRPISFCHFSADSKMLATASWSGLCK
LWSVPDCNLIRTLRGHSTNVGAIVFRPEAGVSLDQSDVNLASCATDGSVKLWNLESDEPV
ADIEGHSDRVSRVAWHPSGRFLGTTSYDNSWRLWDLEVQEEILHQEGHSKGVHDIHFHPD
GSLAATGGLDAFGRVWDLRTGRCIVFLEGHLREIYSVHFSPNGYHLATGSGDNTCKVWEL
RTRKCLYTVPAHQNLLSSVRFQPTDGHFLLTGAYDNTAKIWSHPGWTPLKTLAGHEGKVM
GVDVSPDGKLVATCSYDRTFKLWLSE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgatgaggacgtggcaccggcccccaagaggacgcgtgtgttctacggcagt
ctggaggagaaggagcgcgagcgcctgagctctgaggcagggcgcggcggtgacgcggtg
aaggccggcatcaaggcgggaaacatcaacctgtcgtcaggagagactctggagctggag
gagcgggtcagcgagcggcagaacgacgcgctcgccgccttcgagcagcggcggcgagcg
cggcagatcaccgtgtccaccgatgacgccgaggtgaaggccggcctgcgggcgctcggg
gagccaatcatattgtttggagaaggaccagctgaccgccgggagagactccgtggtgtt
ctgtctgttgtcggtccggatgctctgaagaaatccaggagagacgaagagagagctaag
aggtcacaggacgagtgccagcagacgtggtaccacgaaggctccgcctccctgaaggac
gctcgcctctggttggccaaatactctctgccacgggcgataacacgtctggaggctgca
cgcgcttacagggaggttgccgaggcaacgagggcgatccggcaacaagagctgcagaac
agtctgaggaatctgaacaacttctgtagtcagatcggagacgatcgaccaatcagcttc
tgccatttcagcgccgactccaagatgctggccacggcctcctggagcggcctgtgtaag
ctgtggtccgtccccgactgtaacctgatccgcacgctcagaggacacagcaccaacgtc
ggtgcgatcgttttccgcccagaggcgggagtctctctcgaccaatcagacgtcaacctg
gcctcctgcgctactgacgggtctgtgaagctgtggaacctggagagcgatgagccggtg
gctgacatcgagggccacagtgaccgagtctccagagtggcctggcacccctctggcagg
ttcctggggaccaccagctatgataactcgtggcggctctgggacctggaagtccaggag
gaaattctgcaccaggagggacacagcaagggagtccacgacatccacttccacccagac
gggtccctggctgctactggaggcctggatgctttcggcagggtgtgggaccttcggact
ggacgctgcatcgtgttcctggaaggacacctgagggagatctacagcgtgcacttctcc
cccaacgggtatcacctggcaacaggaagcggtgataacacctgtaaggtgtgggagctg
agaaccaggaagtgtctgtacacagtccccgcccaccagaacctgctgtcttctgtccgc
ttccaacccacagacggtcacttcctgttgaccggagcgtacgacaacacagcaaagatc
tggagtcacccgggctggacgccgctgaagacgctcgctggacacgagggcaaggtgatg
ggcgtggacgtgtctcctgacggaaagctggtggcgacctgctcgtacgaccggaccttc
aagctctggctgtctgagtga
DBGET
integrated database retrieval system
