Clinocottus analis (woolly sculpin): 137780167
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Entry
137780167 CDS
T10471
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137780167 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137780167 (smg7)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
137780167 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
137780167 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
137780167
NCBI-ProteinID:
XP_068424658
LinkDB
All DBs
Position
Unknown
AA seq
1166 aa
AA seq
DB search
MNLCASFLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFSVELPCRV
KSSQLGIISSKVGGAMVTPQPSSCSYVCQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP
SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALTKALESRDEVKPR
WSVPDFIRAFIKFHGHVYLSKSLDQLQLLRERLEEQFQRLILQKAFSSQQLVHVTVINLF
GLHQLRDLNQDQQDFSSEQQTSWFQLLGLFMSFLGVMCSRALLNKKRGEEIMGECPLPAI
KVSLDWLKLRPSVFPEAAVGQRQHVWPWLVSILNGFQPREDDVSCSSVTPLPEEFELQGF
LALRPALRSLDFTKGHQGILVDRDGLPVHTRHQRLISLGKWVADNQPGLIRCRASEDGLL
VFITDIPEQAVEEPQEKEAPVLQESSNSEQTANDGGGGGPASSGLKSVLSAGKTQSSWPD
GGERPVVTFKENIKPREPAPARSGHLKDSGKERRDPAKGFGPAAGRAEPRRDGKRKSEPK
KSGYEKTGGDAGKQVKAQTELRKTPVSEAKKTPVTQTPTTGSSQFIPIHHPGAFPPLPSR
PGFPPSAYVIPPPVGFPGLQVNPGFSFSSGVSVPGPFLQPGVHSQAGKPSHIPYSQQRPS
GPGPGQGPGASGPGPLPQGQQSAQLQVQQALSQQQQSPTKPGQQAGTAKSPPQHPGLQQV
SDGPGPRGAFRAHPDGPDPAACLQQYMQVQDQPAPMWSQKIPMPLKQPQQQAFYVDPLKL
YEQQLDKKLKFPVNMQDFYWDAYRMGDALMKRGPPGGPEQDGPTGTRGGFEDNKPLLPPD
LLKTLADFEEEEELVFSKPPDFFQALAGPLSSAPGHNMFMPSQTRMESGPEVAPPPPTLL
PISGFPMQEYNQNSIFSQAYGKNLPPGSKSDAPMMHQEPSLYSLFEGTPWSPSLPASSDH
STPASQSPHSSNPSSLPSSPPTHNHGAVPFSNFGPIGTPDSRDRRMVDRWKADKTAAGGG
FGLDYLPAAAASAASDTSWHQAGPTGSSWTNQESPMEESSSTVLLDSLKSIWSSSMMQPG
PSALEQLLLQQKQKQQRGHGAMNPPH
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcctcgttcctccgacaggcagaggccctcaaggcggacatgacagac
tctaagctcggggcagcagaggtgtggacgtcccggcaggcgctgcaggatctgtaccag
aagatgctggttaccgacctggagtacgctctggacaagaaggtggagcaggacctgtgg
aaccatgcgtttaagaaccagatcaccacgctgcagagccaggccaagaaccgagccaac
cccaaccgcagcgaggtgcaggccaacctgtccctgttcctagaggccgccagcggtttc
tacacacagctgctacaggagctgtgcacagtgttcagcgtggagctgccatgtcgggta
aagtcttctcagctcggcatcatcagcagcaaagtgggcggagctatggtgacgcctcag
cccagcagctgctcctacgtctgccagcactgcctggtgcacctgggggacatagcgcgc
taccggaaccagaccagccaggcggagtcgtactaccggcacgccgctcagctggtaccg
tccaacgggcagccgtacaaccagctggccatcctggcctcctcaaaaggagaccacctc
accaccatcttctactactgccgcagcatcgccgtcaagttccccttcccagcagcctcc
accaacctgcagaaggccctgaccaaggctctggagagccgcgatgaggtgaagccccgg
tggagcgtgccggacttcatccgggccttcatcaagttccacggacacgtgtacctgagc
aagagcctggaccagctgcagctgctgagggagcggctggaggagcagttccagaggctg
atcctgcagaaggccttcagctcacagcagctggtccacgtcaccgtcatcaacctgttc
gggcttcaccagctcagagacctgaaccaggaccagcaggacttcagcagcgagcagcag
accagctggttccagctgctgggcctcttcatgtccttcctgggcgtcatgtgcagccga
gctctgctcaacaagaagcggggcgaggagatcatgggcgagtgtcctctgccggccatc
aaagtgtccctggactggctcaagctgaggcccagcgtcttccccgaggccgcggtgggc
cagcggcagcatgtctggccctggctggtctccatcctcaacggcttccagcccagagag
gacgacgtgtcctgctcctcagtgacgccccttccagaggagtttgagttgcagggtttc
ctggcgctgcggcccgctctgaggtccctggacttcactaaaggccaccagggcatcctg
gtggacagggacgggctgccggtgcacacgcggcaccagagactcatcagcctcggcaaa
tgggtggccgacaaccagccggggctgatccggtgcagggcgagcgaggacggcctcctc
gtcttcatcactgacatcccggagcaggcggtggaggagccgcaggagaaggaggcgccg
gtgctgcaggagtcgtccaactccgagcagacggccaacgacggcggcggcggcgggccc
gcctcctccggcctgaagtcggtgctgtcggcggggaagacgcagagctcgtggcccgac
ggcggcgagcggcccgtcgtcaccttcaaggagaacatcaagccccgcgagccggcgccg
gcacgcagcggccacctgaaggacagcggcaaggagcgccgcgacccggccaaagggttc
gggcccgccgccgggagggcggagccaaggagggacgggaagaggaagagcgagcccaag
aagagcggctacgagaagaccggcggcgacgcagggaaacaggtgaaggcgcagacggag
ctgaggaagactccggtgagcgaggccaagaagacccccgtcactcagaccccgaccacc
ggctcctcccagttcatccctatccaccatcctggagccttcccaccactgcccagcagg
cctggtttcccgccctcggcctacgtgatcccgcccccggtggggttcccgggcctccag
gtgaacccgggcttcagcttctccagcggcgtgtcggtgcccgggcccttcctgcagccg
ggcgtgcattcgcaggccgggaagccgtcccacatcccctacagccagcagaggccctcc
ggccccgggccgggtcagggcccgggggcctcgggcccggggcccctgccccagggccag
cagtcggcgcagctgcaggtgcagcaggccctgagccagcagcagcagtctcccaccaag
ccgggccagcaggccgggacggccaagagtcctcctcagcacccgggcctgcagcaggtc
agtgacggcccgggcccccgcggcgccttcagggctcaccccgacggccctgacccggcc
gcgtgtctccagcagtacatgcaggtgcaggaccagccggcgcccatgtggagccagaag
atcccgatgcccctgaagcagccgcagcagcaggccttctacgtggacccgctcaagctg
tacgagcagcagctggacaagaagctcaagttccccgtcaacatgcaggacttctactgg
gacgcctaccgcatgggggacgcgctcatgaagaggggcccgccgggggggccggagcag
gacgggcccaccgggaccagggggggctttgaggacaacaagcctcttctccctccagac
ctgttaaaaactctggcagactttgaggaggaagaggagctcgtcttctctaagcctcct
gatttcttccaggcgttggcgggtcctcttagctccgcccccggacacaatatgtttatg
cccagccagacccggatggagagcgggcccgaggtcgcccccccgccgccgaccctgctg
cccatctctgggttccccatgcaggagtacaaccagaacagcatcttcagtcaggcctac
ggcaagaacctgccgcccggctccaagtccgacgctcccatgatgcaccaggagccgtcc
ctgtactcgctgtttgagggcacgccctggtccccgtcgctcccggccagctctgatcac
tccacgccggccagccaatcccctcactcctccaaccccagcagcctgccctcctccccg
cccacgcacaaccacggggccgtgcccttctccaacttcgggccaatcggcacaccggac
agccgggaccgccggatggtggaccgctggaaggccgataagaccgcagcgggcggcggg
ttcggactggactacctgccggctgcagcggcctctgcggcctcagacaccagctggcac
caggccggaccgaccggcagctcctggaccaatcaggagtctccgatggaggagtcgtcc
tccaccgtgctgctcgacagcctcaagtcgatctggtccagctccatgatgcagccgggc
ccgtcggctctggagcagctgctgctgcagcagaagcagaagcagcagcgcggccacggc
gccatgaacccgccgcactga
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integrated database retrieval system
