Clinocottus analis (woolly sculpin): 137780260
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Entry
137780260 CDS
T10471
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
cana Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cana00536
]
137780260 (col13a1)
Glycosaminoglycan binding proteins [BR:
cana00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137780260 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
137780260
NCBI-ProteinID:
XP_068424827
LinkDB
All DBs
Position
Unknown
AA seq
590 aa
AA seq
DB search
MGIPGRMGLKGHAGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKSGQNGPK
GDMGQRGVKGVPGEPGPRGEKGVCGDYTHRMLPITVRNMPSISPLILKRLKQGEPGAQGP
PGPPGPPGLPGTTGLNGASGPMGKPGEPGKPGKDPRLLPGLKGEPGAPGQKGDQGDVGPL
GPEGSKGVNGEQGIKGDEGKRGFPGNRGEKGESGFPGASGFKGQPGLPGIPGIPGKRGYR
GERGEPSVAAQGIKGEPGSPGPPGLMGIKGDAGGDGEKGEAGQEGPAGPRGPPGPTGEPG
KAEIHNNENDIRNIPMMGPPGLPGPSGTPGLHGTKGDVGLPGPPGLDGDKGPRGKPGDHG
PAGPAGPEGPRGEPGVMGFSGPKGDKGDTGPSGSPGLDGPTGENGPPGAPGPIGLPGSMG
PKGEAGQGGRSEMIYGPPGPTGPSGPVGPAGSQGFAGPKGEPGIGVRGEKGASGHKGDKG
DRGHLGLPGAHGLDGRPGPVGLIGPAGVSGPAGPKGERAEKGDAGLPGPTGPQGIPGLVG
PQGLKGNRGERGKKGNRGTKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNK
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggggattcctgggagaatgggcttaaaaggacacgcaggggagaagggagccccaggc
gagccaggtctgtctatcattggtccaagaggccctccgggacaacccgggacgagagga
tttccaggcttcccaggtccaattgggttggatggcaagtctggacagaacggaccgaag
ggagacatgggtcagcgtggcgttaaaggagtcccaggggagcctggacccagaggggag
aagggcgtatgtggagactacacacaccggatgttgcccatcaccgtacgcaacatgccc
tcaataagccctctaatcctaaaacgcctcaagcagggtgagcctggagcgcagggaccc
ccgggaccgccaggaccccccggtctcccaggaaccacagggctgaacggagccagtggc
ccaatgggtaagcccggtgaaccaggaaaaccaggaaaagacccgcggcttttaccagga
ctaaagggggagccgggtgcgccgggacaaaagggggatcaaggggacgtcggcccactc
ggccctgaaggctcaaagggagttaacggagaacaaggaattaagggagacgaaggaaag
aggggtttcccaggaaacaggggagagaagggggagtcaggtttccccggcgcttctggg
ttcaagggccagcctggccttcccggtatcccgggcatcccgggcaagaggggctacagg
ggtgagcggggagaaccgagcgttgcagcccaggggattaaaggagaaccaggttcccca
ggaccgccgggcctcatgggaatcaagggggacgcaggtggtgatggagagaagggggaa
gccggtcaggaaggcccagctggaccacgaggtcctccaggcccaaccggagagccagga
aaggctgaaatccacaacaatgaaaacgatatccgcaacataccgatgatgggcccccct
ggattacctggaccttcagggacccctggcctccacggtaccaagggtgatgttggtctg
ccaggccctccaggactggacggagacaaggggcccagggggaagcccggagaccacggc
cccgcgggcccagccggccctgaaggccccagaggggagcctggtgtcatgggcttctct
ggacccaaaggggacaagggagacacgggtccatctggatcacctggtttagacgggcct
acgggtgaaaacgggcccccaggggcccctggccctattggattacccggctcaatgggt
cctaaaggggaggccggacaggggggaaggtcggaaatgatttatggacctccagggccc
accggaccttcaggaccagtcggccccgccggatctcaaggctttgcggggcctaaggga
gaacccggcatcggcgtgagaggagagaagggagcgtcgggtcacaagggcgacaagggc
gacagaggccatcttggacttcctggggctcatgggttagacggccgaccgggtccagtg
ggtctcataggaccagcaggtgtgtcggggccagcaggaccaaaaggggagcgagctgag
aagggagatgcaggactaccaggacccactgggcctcaaggcatccctggtttagttgga
ccacaaggactcaaagggaaccggggagagaggggcaagaaaggcaacagggggaccaaa
ggggataagggagaccaaggagcacctggattagatgccccctgtccgttgggagacgac
ggcttaccggttcccggctgttggaataaatga
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