Clinocottus analis (woolly sculpin): 137780750
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Entry
137780750 CDS
T10471
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
cana Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cana03036
]
137780750 (hfm1)
Enzymes [BR:
cana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
137780750 (hfm1)
Chromosome and associated proteins [BR:
cana03036
]
Eukaryotic type
Meiosis-specific proteins
Others
137780750 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
137780750
NCBI-ProteinID:
XP_068425051
LinkDB
All DBs
Position
Unknown
AA seq
1502 aa
AA seq
DB search
MLDTDDCTLSLDNLFFEKPIVHKVKPLHQEVSPWQLEVPPSLSQVPATQDVQKEAESIPT
LYSFSQRLNTFLPPLKGSAGLKDLPSKINRPYTYNNDKKEIEQTQSGSNRTSTSLWGGDG
FRDYSQGSCQSGRSRDETLQHSGHAAISRRCLSLDDSKSPPLRKSLFKVQVLNSGGDLSN
IDDLRSSSSRSQTASRPQTFLSPVAMATVPPPLQPPRATVSQAACPRSPKPPSPPPPLGS
SAASGRPPQKAAHAETQDKGTKRAFVPPMTPQPLCIQGSSGSGFLRPVSEIPAKFRSVFK
EFPFFNYVQSQALDDVLYTGKNFVACAPTGSGKTVLFELAIIHLLMETSEPWRDVKAVYM
APIKALCSQCFESWKQKFGPLGLNCKELTGDTEIDDFFEIQDSHIILTTPEKWDSLTRKW
KDNCLLQLVRLFLIDEVHVVKDATRGATLEVVVSRMKAVHAYRTAHNPETGLSMRFVAVS
ATIPNTSDIADWLSDESGPATYLDMDESHRPVKLRKVVLGFPCSPNQTEFKFDLSLNYKM
ANIIQTYSDQKPALVFCSTRKGVQQSAAVLAKDARFIMSIEHKQRLTQYANSILDSKLKD
LVMFGVGYHHAGVELSDRKLIEEAFTLGDLPVLFTTRTLAMGVNLPAHLVVIKSTMQYVG
GSCEEYSESDMLQMIGRAGRPQFDTSATAVIMTKIQTREKYMNLLNGEEIIESSLHSHLV
EHLNAEIVLQTVSDVNMALDWIRSTFLYIRALKNPTHYGFSANLDRYGIEAKLQELCLKN
LNSLSSIGLINMDEDINIKPTEGGRVMARYCVAFDTMDQFSKVAGTESLSDLIDLVSKSR
EFSDIQLRMNEKRPLNTFNRDKNRITIRFPLQGKIKTSQMKVNCLIQTQLGSISIQEFGL
TQDTAKIFKNGMRISKCLSEFLSHRSKIGFSALLNSLILAKCFRAKLWENSFYVSKQLEK
IGQTLSTAMVNAGLTTFSKIEQTNARELELILNRHPPFGNQIKDSVVHLPKYEVTLEQLP
RYSCATAEIVVKVNLKNQAHLLSRRTAPDNHYVSLIIGNSDNAVVFLQKLTDLVLLKSGS
WSKKIEVAKASQGEEISVNLISSQYVGLDIQQKFNIYYSGARRFGNDNLYNLPLKPTRQS
PQHSALKPQSPDQAATQKENAPSAADQDLGNKRQCNHFCKNKDLCGHDCCKVGVTVARKR
SANQESGFSSYLKDLRSRCDTLSQTPVKRLRLKMSEESVSVNMQEFAYKPKERRPTVSWY
GGSHCGASGRLSETVDLTEEDVVHLNDVDRMWMNPGISVAEEQNHELLLNQIKTTSSAAV
SSQGTFCLNASSSQIPTVCFDLGNEWDDFDDENLVHASETPSASCLTSAEPEVQQCVDYN
MPGFAATSAPELLKPCATTARTPLRSIWPGVREQEPSLVTVRPLNRITLDWNTKRSNTFR
DEITVKRPDYLQKQTETHEAPLTRRFDFFSTMSGPSNTSSTVNRSTECKEEEAFLGIFDG
IF
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atgttggacaccgatgactgcaccttgtccttggacaatctgttttttgagaaacccatt
gtccataaagtaaagccactgcaccaggaggtcagcccatggcagctggaagtgcctcca
tccctttctcaggttccagccactcaggatgtgcagaaggaggcagagtctatccctacc
ctatacagtttctcacagagactcaatacattcctgcctccattgaaaggatcagctggc
cttaaggatttaccatcaaaaatcaacaggccttacacttataacaatgataagaaagaa
attgagcaaactcagagtggcagcaataggaccagtaccagcctttggggaggtgatggg
tttagggattactctcagggttcctgtcagagtggcagaagtagagatgaaaccctgcag
cactccggtcatgcagccatcagcaggaggtgtttgtctctggacgacagcaaaagccca
cctctacggaaaagcttgttcaaggttcaggtgttgaacagtggaggtgacttgtcaaac
atagatgacctcagaagcagcagcagcagaagccagacagcatccagacctcaaactttt
ctcagtccggttgccatggcgacagtgcctcctcctcttcagccgccacgggcgacagtt
agccaggcagcttgtcctcgctccccgaagcccccctccccaccccctcctctgggctca
tctgcagcgagtggccgacccccgcagaaggcggcacatgcggagacgcaggacaagggc
acaaagagagccttcgttccgcccatgacgcctcagcctctttgcatacaagggtcctct
gggtctggatttttaagaccagtttctgaaatcccagctaagttcagatctgtcttcaag
gagtttccctttttcaactacgttcagtcccaagcacttgatgatgttctttacacgggt
aagaactttgtggcatgtgctcctactggatctggtaaaacagtgctgtttgagctggcc
atcattcatttgttaatggagacctcagagccctggagagatgtcaaagctgtctatatg
gccccgatcaaagccctctgcagtcagtgctttgagagctggaaacagaagtttggtcct
ctggggctgaactgtaaggagctgacgggcgacacagagattgacgacttctttgagatt
caggactctcacatcatcctgaccacacctgaaaaatgggacagcttgacaaggaaatgg
aaggacaattgtctgttgcagctggtcaggctctttcttatcgatgaggtgcatgtggtg
aaggacgcaacccgcggtgccacgctggaagttgtcgtgagcaggatgaaggctgtacat
gcctacagaacagcgcacaatccagagacaggcctctccatgaggtttgtggctgtatca
gccaccatacccaacacctctgatattgcagactggctgtctgatgagagcggccctgcc
acatatctggacatggacgagagccaccgtcctgtgaaactaaggaaggtggtgctggga
ttcccgtgcagcccgaaccaaaccgagttcaagtttgacctttcactcaactacaagatg
gccaacatcatacagacgtactccgaccagaagcctgctctagtgttctgctctacaagg
aaaggagtccagcaatcagctgcagttctggccaaggatgctcggttcattatgagcatt
gagcacaagcaaaggctaacgcaatacgcaaactctattctggattcaaaactgaaagat
ctggtgatgttcggagttggttaccaccatgcaggtgttgaattgtctgataggaagttg
atagaagaggccttcactctgggagacctgcccgtcctctttaccaccaggactctggcc
atgggggtgaacctgccagctcatctggtggtgatcaagtcgaccatgcagtatgtggga
ggctcctgcgaggagtactccgagtctgacatgctacagatgataggccgagctggaaga
ccacaatttgatacatctgcgactgcagtgatcatgaccaagatccaaaccagagaaaag
tacatgaaccttttaaatggggaggaaatcattgagagcagcttacacagtcacctggta
gagcacctgaatgctgagattgttctccaaaccgtcagtgatgtcaatatggctttagac
tggatacgctccaccttcctctacatccgagccctcaagaaccccacacactatggtttc
tccgccaacttggacagatatggaatcgaagcaaaactgcaagaattgtgtctgaagaac
ctcaactctctgtcctccattggtctgatcaacatggatgaagatatcaacatcaaacca
acagagggaggcagagtgatggctcggtactgcgttgcctttgacaccatggaccagttc
agcaaagtggctggcactgagagcctgtccgacctgattgatttagtgtcgaagagcaga
gagttcagcgacattcagttgagaatgaatgagaagaggcccctgaacaccttcaacagg
gacaagaaccggatcaccatcaggtttcctcttcagggaaagatcaaaaccagtcagatg
aaagtgaactgcttaattcagactcagttgggatccatctcaattcaagagtttggactt
acacaggacacagcaaagatcttcaagaatgggatgcgcatcagcaaatgcctgtcagag
tttctaagtcaccgatctaagatcggtttctccgctctgcttaactccctgatcctggcg
aagtgcttcagagccaagctttgggaaaactcattctatgtttccaaacagctggaaaag
ataggccagacactgtcgactgccatggtgaacgctggactcaccacttttagcaaaata
gagcaaaccaatgccagagaacttgagctgattcttaacagacatccaccatttggcaac
caaatcaaagactctgttgtgcatctcccgaagtatgaagttactttggagcagctcccg
aggtatagctgtgccacggcagagattgtggtgaaggtgaaccttaaaaaccaagcacac
ctgctgtccaggagaacagctccagacaaccactacgtctccctgattatcggaaactct
gacaacgccgtggtcttcctacagaaactcacggacttggtcctactgaagagcggtagc
tggtcgaagaagattgaggtagcaaaggcctcgcaaggagaggagatcagtgtcaatctc
atcagctcacaatatgtgggcctggacatccaacagaagtttaacatctactactctgga
gccaggaggtttggaaatgataatctttacaacttacccttgaagccgactagacagagt
ccacagcactctgcactgaaaccacagtctccagatcaagctgcgactcagaaggaaaat
gctccatctgctgcagaccaagatttaggcaataaaagacaatgcaaccacttctgcaag
aataaggatctctgtggccacgactgctgtaaagtaggtgtaactgtggcacggaagagg
tcagcaaatcaagagtccggtttctcttcctatttgaaagacctaaggagcagatgtgac
acactttcacagactcctgtcaaacgacttaggcttaaaatgagcgaggagtccgtgtct
gtcaacatgcaggagtttgcttacaaacccaaagagcggcgacccactgtttcctggtat
ggaggaagtcactgtggagcttcaggaagactctctgagactgtggatctgacagaagaa
gacgtcgtccacctgaacgatgttgacaggatgtggatgaacccaggaatcagtgttgcg
gaggaacagaaccatgaactgcttctgaaccagatcaaaaccaccagctcggctgcggtg
tcaagccaaggcactttctgcctaaatgcttcatcctcacaaatacccactgtgtgcttt
gaccttggaaacgaatgggacgactttgatgacgagaacttggtgcatgccagcgagacg
ccatcggcctcgtgtctaaccagtgctgaacctgaagtccagcagtgtgtcgactacaac
atgccaggctttgccgctacatctgcaccagaactcctcaaaccctgtgcaaccacagcc
agaacaccgctgaggtcgatttggcctggagtcagagaacaagaaccctcactggttaca
gtcagaccactgaacagaatcacccttgactggaatacgaagagatcaaacactttcaga
gacgagatcacagtcaaaagaccagattacctccaaaagcagactgagacccacgaggcc
ccacttaccagaaggtttgatttcttctcaacaatgagtggcccatccaacaccagctca
actgtcaacagaagcactgaatgcaaagaagaggaagctttccttgggatatttgatggt
atattttag
DBGET
integrated database retrieval system
