KEGG   Clinocottus analis (woolly sculpin): 137781228
Entry
137781228         CDS       T10471                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
cana  Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:cana00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cana03400]
    137781228 (mdc1)
DNA repair and recombination proteins [BR:cana03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    137781228 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 FHA BRCT TF_Otx
Other DBs
NCBI-GeneID: 137781228
NCBI-ProteinID: XP_068425950
LinkDB
Position
Unknown
AA seq 2189 aa
MDATQVISDSILESDEEENTEENENEKGRPLAKLCILKNEHIPETELPLFLGDNVVGRDP
NTCSLPLSAPSISKKHATISLSVYRGKGPRNKVDTEALIWDLGSMNGTSKGHFKLTPHVR
YALSERDNLVVADIPCQYVNCTIDTVSSKGHTMTPVSRNSGVNARWPDDSGDMRGDMSTG
SQQYVNRASKSGVSLPGHEDTRKTPVRTSCLFFEQTPTQPEGTLVPESDSDSASDKEKGE
RRHKTPVSDSDSHISGPNCSTFLSPTNKIVPESEDESPITPSSSTKNRPSRHVSFSKEEP
DVEMGQRQLKNKKTLAIVADSDEEEERATLEGRKSEESEQHVTGKQESNVSLTGEDEMPV
FPPAVLTDAIPVFDMDSDTDMEGEEAMVAPAGPVTLNTNQQADQPPNTAQFHMDSDSDVD
ENALHEVPKSVPSSAHHTKPPHVISVIQTEGITMDSDTDVDDDDVSDTAIKANPASLQSS
HAADSSSSTQRNDFHLDSDTDIEEEEEKQCGTNNSCSKIDETPSRLDIKPIESAPAVPHS
LNLDSDTDDESFPVVAISELPVVSAVTESVTTASSGAVLDVLSDSDTEKEDNSSLLIPVI
VSTLSVDLGTTSEALQSDSDADTDVDESSVPPGAGGVNPASLTVDSDTDVEDKEVDFGEA
GENQIPSLRREITPGLLVPLQQNCSTPVQASEEGELEDVETQAFLIPSSGPFRRARPIEL
YPCTDSLEDDLCVVAETQSFILQTRDCQGDPPKDHNNESTRSSVGEKGEQCIQGGSFQLG
LSESSHLEGQAQALAMESTQAFVSVVEGANLEDTQAYVDRTSLENNSNLQVNGEDQEPAR
CPVMSEKEGREDLALEETQAYISEPNSETDEDERKNTATAETQPFHLPTSSTLAMAATQP
MFALEEEDEESLDEENPISSVLQVQPSPQHVTAEREEHVEAAQPQKRHLHGAPSVAETQP
MHVSENEESDDEDLIPQRSAKPHQLKEEQTQTLTNSHALLVETQPMHIGVPETQPMATSG
NEESDVEDSIPGPQKRNTKQLGLEDEQTQTLTNSELSTVGTQPMDTGEDGESDEEDSIPG
PRKRRAKPLQLEEESQPLTSSGVSVVETQPLDTCIRDQSDEELSIPGPRKRKAKARQLEE
EETQPLTISSVSAVESQPMIVGESRKSRAKPIQEEDTQPLTNPEASTVEIKTVQQYRRGK
GSQTETSGATVGGRRRTQTRLREEKEQAECSEPSKRPTRGKMKALPTTRGRRGKSRPEDE
EEKEEKEEEEEVEQAKHARGKKYTRHQKDSEEEEEMLETERQNAENINLIKVQEKGREEQ
DKLERERKDREEQESMQAENAERFRLEQERAEKERIERERKEEDKKERADKAQKEKQLEK
ERKQKEEKERLEREKAEREEKERIEKERKKEEKLRLEHEKAEREEKERIEKERKKEEKLR
LECEKAEREEKVRIEKERKKEEKLRLEREKEERKEKERIEKERKKEEKLRLEREKAEIEK
LEREEKERTEKEREEEEEKERVKTAEREREERLERERKEPEEKQEKEAKEKQTKEQQENK
KKENNPKTPAKGRRAAPRTTEPHEDSARLDIDDVPARRTRSRSSSSNSVSSERSASSVTP
RGSRGRGRGAKRTSGPPQAAAARSSNRRTIAAEPTHQDSYDSSPQGVLSRSNSTSSEISS
CSLSGGRGGRQRGRRRKTESDSFRPINSQSGQNLAPKLAARGRKGTRAEESYNEVTKDIE
KTDSQQASTTRGRQRANANASKASAGDKKAPSSPECASEDSPMLKRNVRGRVPKVVKSET
VETRVAPAVSDGAEAKGKRDGRKRELEVNTDEEASCSSKVSKAKEKAQTAEAAKEETKDE
SRVQVMRKGRASSTRAKKNAKDSSAGSEVMEESEKMEVTVEKRGRGRPSVVQKLKKEKQE
QSAASIDQNTHLEESEPQTETSSVSRKRQALVDSSPVAKTRRASSASPAAGGQSRAARQA
YKVLFTGVMDEEGERVLACLGGSMAKGVADMNFLVTDKVRRTVKFLCAVAKGVPIVNTHW
LDESGKAGSFLSPNAFVVKDPEQEKKFNFCLQESLRIASSQSLLQDYEIHVTKSVKPEPV
HMKDIISSSGATFLPKMPSSHKPRTVVISCEEDWLLCGPALSASLPVVTAEFILTGILRQ
KLDLQAHKLSAPANTLHLSGGMGRSKKKT
NT seq 6570 nt   +upstreamnt  +downstreamnt
atggacgccactcaagtgatcagtgactcaatcttggagtcagatgaggaagaaaataca
gaggagaatgaaaacgagaagggacgaccattggcaaaactgtgcatcttaaaaaatgaa
cacatccctgagacagagttgcccctctttttgggagataatgtggtgggccgtgacccc
aacacctgcagcctgcccttgtcagcaccctcaatatccaagaagcatgccaccatcagc
ctctctgtctacaggggaaaaggtcctcgcaataaagtggacacagaggcattgatttgg
gacctagggagcatgaatgggaccagcaagggccacttcaagctgactcctcatgtacgc
tatgccctcagtgaacgtgacaatttggtggtggcagacatcccatgtcaatatgtcaac
tgcactatagacacagtctcctctaaaggccatacgatgactcctgtgagcagaaattca
ggggtaaatgctaggtggccagatgactcgggagatatgagaggtgacatgagcacaggg
agccagcaatatgttaatagggcttcaaagtctggtgtgtcattacctggtcacgaggac
acaaggaagactcctgtcagaaccagttgcctattctttgagcaaactccaacccagcca
gaggggaccctggtcccagaatctgactcggactctgcctcagacaaagaaaaaggagaa
agaaggcacaagactccagtgtccgattctgactcccatatatcaggtcccaactgctca
acattcctgagtcccacaaacaaaatcgtccctgaaagtgaggatgaaagtccaatcacg
ccgtcctcctccactaaaaataggccttccagacatgtaagcttcagtaaggaggagcca
gacgtagagatggggcaacgtcagctaaagaacaaaaagacacttgcaattgtggccgac
agtgacgaggaggaagaaagagcaacactggaagggaggaagtctgaggaaagtgaacaa
catgtgacagggaaacaggaaagcaatgtcagtcttactggagaagatgaaatgcccgta
tttcccccagcagtcttaacagatgcaatccctgtatttgacatggacagtgacactgat
atggagggagaggaagcgatggtggcacctgcaggcccagtaaccttaaatacaaaccaa
caagctgatcagccaccaaacacagcccagtttcacatggacagcgattcagatgtcgat
gagaatgccttacacgaagttcccaaatctgtgccttcctctgctcaccacactaaacct
cctcatgttatttcagttattcagacagaaggcatcactatggacagtgatactgatgtg
gatgatgacgacgtgtcagacactgctattaaagcaaacccagcatcacttcaaagctca
cacgcggctgactcttcctcttctacgcagcgcaacgattttcacctagacagtgataca
gatattgaggaagaggaagaaaagcaatgtggaacaaataattcatgctctaaaatagac
gaaactccttctagattagatatcaagccaattgaatctgcccctgctgtgcctcacagc
ctgaatctagacagtgacacagatgatgaatcttttcctgtcgtcgccatcagtgaactc
ccggtggtgtctgctgtcaccgagtccgtcaccactgcgagttcaggagctgttttagat
gttctgtctgacagtgacacagaaaaggaagacaactcttctctgctcatacctgtcatt
gtctcaaccttgtctgtcgatcttggtaccacgtcagaagctcttcagtcagattcagat
gcagacacagatgttgatgaatccagtgtgccacccggtgcgggcggagtcaatccagcc
tccctcacagtggacagtgacacagatgtggaagataaggaagtagattttggagaggca
ggtgagaaccagattcccagcctgcgcagagaaattacacctgggttgctggttcccctt
cagcaaaactgctctactccggtacaggcgtcagaagaaggagaactggaagatgtggag
acgcaggctttcctgattccttcatcaggtccttttagacgtgcaagacctatagaattg
tatccctgcaccgacagcctggaggatgacttgtgtgttgtggctgagactcagtccttc
attcttcagaccagagactgccagggcgaccctccaaaggaccacaacaacgagtccacc
aggtcctctgttggcgaaaaaggcgaacagtgcattcaaggagggtctttccagctagga
ttgtctgaaagcagccacctggagggtcaggcccaagctctcgccatggagagcacccaa
gcttttgtctctgtggtggagggtgcaaatctggaagatacccaagcatatgtagacaga
acttccttggagaataattcaaatctgcaagtaaatggagaggatcaggaacctgccaga
tgtccagtaatgtctgaaaaagaaggccgggaagatttagccctggaagaaacacaggca
tatatttccgagcccaacagtgaaaccgatgaagatgagagaaaaaacacagctactgct
gagactcagcctttccaccttcccacctcatctactctcgccatggctgcaacccaacct
atgtttgccttggaggaggaggacgaggaaagtttggatgaagaaaatcctatttcctct
gtactacaagttcagcccagcccacagcatgtaacagcagagagagaagaacacgtggag
gcagcgcaacctcagaagaggcacctccatggtgctccttctgtggctgaaactcagccc
atgcatgtaagtgagaatgaggaaagtgatgatgaggacttgattccacaaagaagtgca
aagccacaccagcttaaagaagagcagacacaaactctcacaaactctcacgctttactt
gttgaaacgcagccaatgcacattggtgtccctgaaactcagcccatggctacaagtgga
aatgaggaaagtgatgttgaggattcaattccaggtccacaaaaaagaaacacaaagcag
ctggggctcgaagacgagcagacacaaacactcacaaactctgagctctccactgttgga
actcagccaatggatacaggtgaagatggagaaagtgatgaagaggactcaattccaggt
ccacggaaaaggagagcaaaaccattgcaacttgaagaggaatcgcagcccctcactagt
tcgggagtttctgttgttgaaactcagccgttggatacatgtatacgtgatcaaagtgat
gaagagctctcaattccaggtcctagaaaaagaaaagcaaaggcacggcaacttgaagag
gaggagacacagccccttactatttcatcagtctctgctgttgaatcccagcccatgatc
gtgggtgaaagcagaaaaagtagagcaaagccaattcaagaagaggacacacaaccgctc
acaaatcctgaggcctccactgtagaaattaaaactgtccaacagtatcggagaggaaaa
gggagtcaaactgaaaccagtggcgcgactgttggaggtagaagaaggacacagacaaga
ttgagagaagagaaggagcaggcagagtgttctgaaccttccaagagaccgacaagaggg
aaaatgaaggccttgccaactactcgaggaaggagaggaaaatcaaggcctgaagatgag
gaggagaaggaagagaaggaggaggaggaggaggtagaacaggctaaacacgctagaggg
aaaaaatatacaaggcatcagaaagatagcgaagaggaggaggaaatgcttgaaacggaa
agacaaaacgctgaaaatatcaacctaataaaagtacaggaaaaagggagggaagaacaa
gacaaattagaaagggaaagaaaagatagagaagagcaagaaagcatgcaggctgaaaat
gcagaaaggttcagacttgagcaagagagagcagaaaaagaaagaatagagagggaaaga
aaggaagaagataaaaaggaaagagctgataaggcacaaaaagaaaaacaattagagaag
gaaagaaaacagaaggaagagaaagagagattagagcgtgaaaaggcagaaagggaagag
aaggagagaatagaaaaggaaagaaagaaggaagaaaaactgagattagagcatgaaaag
gcagaaagggaagagaaggagagaatagaaaaggaaaggaagaaggaagaaaaactgaga
ttagagtgtgaaaaggcagaaagggaagagaaggtgagaatagaaaaggaaagaaagaaa
gaagaaaaactgagattagagcgtgaaaaagaagaaagaaaagaaaaggagagaatagaa
aaggaaagaaagaaggaagaaaaactgagattagagcgtgaaaaggcagaaatagaaaag
ttggaaagagaagagaaagagagaaccgaaaaggaaagagaggaggaggaggaaaaagag
agagtgaagacagcagagagggaacgagaagaaagacttgagagggagaggaaggaacca
gaagaaaaacaagaaaaagaggcaaaagaaaaacaaacaaaagagcaacaagaaaacaag
aaaaaagaaaacaaccccaaaacacccgcaaaaggtcgaagggctgccccgcgtacaaca
gagccacacgaagactccgccagattagacattgacgacgtcccggcaaggagaacccga
tctcgctccagctcttccaactccgtcagctcggagaggtctgcttccagtgtgacccct
cgggggagccgggggagaggccgaggagccaagaggaccagtgggccgccgcaggctgcc
gccgccagaagcagcaacaggaggactatcgctgcagagccaacacatcaggacagctat
gatagttctcctcagggagtcctttccaggtccaactccaccagctctgagatttccagc
tgcagcttgagcggaggaagaggaggcaggcagcgaggaagaaggaggaaaacagagtca
gactctttccgtcctatcaatagtcagagtggacagaatttagctcccaaacttgcagcc
agaggcagaaaaggcacaagagcagaagaatcttataatgaggtgaccaaagacattgag
aagacagattctcagcaggctagtaccaccagagggcgacagcgagctaatgcaaatgct
tctaaagcttctgctggagataagaaagccccttcaagtccggagtgtgccagtgaagat
tcacctatgcttaaaaggaatgtcaggggcagagtcccaaaggtggtaaagagtgagacc
gtggagacacgagtggctcctgcggtgagtgacggagcggaggctaaagggaaaagagac
ggaagaaaaagagagttggaggtgaatacggatgaggaggccagttgtagctccaaagta
tccaaagcgaaggagaaagcccaaacagcagaggcagcaaaagaggaaacaaaagatgag
agtcgagtccaagttatgagaaaaggtcgggcatccagcactcgagctaagaagaatgca
aaagattcctccgctggatcggaggtgatggaagaaagtgagaaaatggaggtgacagtt
gagaagagaggcagaggtcggccatcagtggtccagaaactgaagaaagagaagcaggaa
caaagtgcagcatccattgaccagaatacacatttggaggaatcagagccccagacagag
accagcagtgtatcccggaagcgacaagctcttgtggactcctcacctgtggccaagacc
cgccgcgcctcctctgcttccccggcagccggcggtcaatcacgagctgccagacaggcc
tacaaggtgctgttcacaggtgtgatggatgaagaaggggagagagtattggcttgtttg
ggaggcagcatggctaaaggagtggcagacatgaacttcctggtgactgataaggtgcgc
aggaccgtcaagttcctgtgtgcggtggcgaaaggagtccccattgtcaacacacactgg
ctggatgagagtggtaaggctgggagcttcctgtctcctaatgcgtttgttgtgaaggat
ccagagcaggagaagaagttcaatttctgcttgcaggagtctctgaggattgccagcagt
cagtctcttttacaggactatgagatccatgttacaaagtcagtgaaaccagagccagtt
cacatgaaagacataatctcctccagtggagctaccttccttcctaaaatgccctcttct
cataagcctcggactgtcgtgatttcctgtgaggaggactggctgctctgcggcccggct
ctctctgcatccctcccagtggtcacagcggagttcattctcacagggatccttcggcag
aaacttgaccttcaggcccacaaattgtctgcccctgcaaatactctacatctttcagga
ggaatgggaaggagcaaaaagaagacatag

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