Clinocottus analis (woolly sculpin): 137781407
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Entry
137781407 CDS
T10471
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137781407 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137781407 (smg5)
03032 DNA replication proteins [BR:
cana03032
]
137781407 (smg5)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
137781407 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
137781407 (smg5)
DNA replication proteins [BR:
cana03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
137781407 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
137781407
NCBI-ProteinID:
XP_068426245
LinkDB
All DBs
Position
Unknown
AA seq
1127 aa
AA seq
DB search
MSGPVQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKASYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEADQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDA
PFEGAYGNLKRLFDKAAKMYQQVKKQEMKKLSPSRQRLKDIKHLLVSFMYLQSLLQPKNS
LLETELTSLCQSVLEDFNLVLFYLPPPTPGGAHHSPSEEEEEQQQQQQHADSSCPVLPDT
LVFKMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEAESQVPPL
PTDATDDLEVKDLSAPATDRSVEKPLQNGSLEQEDEEDEEKDEEGCARVAAKKQCSVEEQ
RQLEEEKQRQKKKYTRLSRLRRRRCARKDTRGEDESDLSEGFESEDDEDDVDESRGHADS
TDATTTGTPINPPAVRKETKRDTLGEEGSWGSGSEEEEEVGTAFDVETDSDMNSQESRSD
LEDIEDAETSDNLEGQASEHPDEEEDEDQPKEDGGDREGNTPPTTNGPLLPSDSSISSNL
QAMSSQLFQAKRCFRLAPTFSNMLLRPQASSTSGIPTPTEASAPPSQETPPPPEDSPCDL
NSAAANGTNENDLDSDSEGSQHSTQSVHSEKTLLEKLEILTNQGLIQVVKVFVDWLRTNT
DIILMCAQSSQSLWNRLSVLLNLLPDGSKMLEAELGLTAEVTELLNECEQPGLVQSLLLP
EDLALRHLPALNVAHRRLDFTSRNPSLSSLQECVVRVCCIRSFGHFLTNLQGNVLHFNPE
AGIFTSISQSEQDNLVQQAKAQFRMAEKEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKA
QSSMSPYLVPDTAALCQHLNLIRQLAGSGCFIIIIPRTVIDGLDRLKKENAGARDGIRFL
ESEFRKGNRYIRCQKESGRSFERDKLKRQDIEAWHLYKMVDSCRQLTVSQSNGDEDTAGM
VTILTDHQVEDLCTRSAAMKSAIQAAGSAGMELKNIVEFYRQWKEIG
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccggtgcaggacagcgagcccgaagcgaaagtcctcctcatcaagcggctt
tacagggccgtggtggagtctgtgcacaagttggacgtcatcatcggcagcaaagcgtcc
tacagagaggtcttcaagccggagaacatcagccttcgtaacaagttgagggagctttgt
gtgaagctaatgtttctccacccagtcgactacggccgtaaggctgaggagctgctctgg
aggaaggtttactatgaggtcatccaggttatcaagaccaacaagaagcacatccacagt
cgcagcgctctggagtgcgcttaccgtacacacctgatcgccggcgttggtttctaccag
cacctgctgctatacatccagtcccattaccagctggagctgcaggactgcatcgactgg
acccacgtcacagaccctctgataggtcgaaagaaaccagtgtcagccacccccaaggag
atggagtgggcacagatggcctgtcatcgctgtctggtctaccttggagatctagctcgt
tatcagaatgaacttgctggagtggaggctgatcagctggcagaacggttttaccatcag
gctctgtctgtcatgccacacgtgggaatgccgtttaaccaactgggcacactggcaggg
agcaagttctacaatgtcgaagcaacctactactaccttcgctgcatccaatccgatgcc
ccctttgagggcgcctatggcaacctgaagcgcctgtttgacaaagctgccaagatgtac
caacaggtgaagaagcaggaaatgaagaagctgtctccttctcgacaaagattaaaagac
atcaagcacctcctggtgagcttcatgtaccttcagagcctgctgcagcccaagaacagt
ctactggagacggagctgacgtcactttgccagtcggtgctagaggacttcaacctggtg
cttttctacctgccgccgccaacgcctggcggtgctcaccactcccccagtgaggaagag
gaggagcagcagcagcagcagcagcatgctgacagctcctgccccgtgctgccagacacc
ctcgtcttcaagatggtggtcacttgtctaatggtggtgcacagcctgaagaggggagga
tcaaagcagtacagtgcgtccatagctttcacgctggcgctgttctcccacctggtgaac
cacgtcaacattcgactgcaggctgaactggaagaagcggagagccaggtgcctcctctt
ccaactgatgccacagacgacctggaggtgaaagatttatccgctcctgcgacagatcgc
tccgttgagaagcctctgcagaatggctccctggagcaggaagacgaggaggacgaggag
aaggatgaagaaggctgtgcgagggttgcggccaaaaagcagtgcagtgtggaagaacag
cgccagttggaagaagagaaacagagacagaagaagaagtacacccgtctctctcgactc
cgacgacgccgctgtgcgcgcaaggacactcgaggagaggacgaaagtgacctgagcgag
ggcttcgagagcgaagacgacgaagacgatgttgacgagagtaggggccacgctgactca
acggatgccaccactacaggaaccccgatcaatccaccagctgtcaggaaggagaccaag
cgggatactcttggtgaggaaggcagctggggcagtggctccgaagaggaggaggaagtg
gggacggcgttcgacgtggagaccgactcggacatgaacagccaggagtctcgctcggac
ctggaggacatagaggacgcagaaacctcggacaacttggagggtcaggcgtcggagcat
ccagacgaggaggaagatgaggaccaacccaaggaagacggaggcgacagggagggcaat
acaccgccgaccaccaacgggcctctcctgcccagcgactccagcatcagcagtaacctc
caggccatgtcatcgcagctcttccaggccaagcgatgcttccgcttggcgcccaccttc
agcaacatgttgttgaggccccaagcctcgtcgacttcgggtattcccaccccgaccgag
gcctctgctcccccctcccaagagacaccccctcctcccgaggactcaccctgcgatctg
aactctgccgctgccaacggaacaaatgaaaatgacttggactctgattcggaaggcagc
caacatagtactcaatcagtacacagtgagaaaaccctcttagaaaagctggagatcctg
accaaccaggggttgatccaggtggtaaaagtctttgttgattggctaaggacgaacacc
gacatcatccttatgtgtgcacagagttctcaaagcctgtggaaccgactgtctgtgttg
ctcaacctgcttccagatggtagcaagatgctcgaggctgagctcggtctgaccgccgag
gtgacggagctgttaaacgagtgcgagcagcctggtttggtccagagtctgctgctgcct
gaagatttggctctgcgacacctgcccgctctcaacgtagctcaccgccgccttgatttc
actagccgcaacccctccctcagctccctacaggagtgtgtcgtgcgagtgtgttgcatt
cgcagttttggccacttcctgacgaatctccagggcaacgtgctgcacttcaacccggag
gcgggcattttcaccagcatcagccaatccgaacaggacaatctggtgcagcaggccaag
gcccagttccgaatggctgaaaaggaagctcgtcgaaatcgcctaatgagggatatggcc
cagcttcgactacagttggaggtgtcgcagctagagggcagccttcaacagccgaaggcc
cagtcgtccatgtctccctacctggtgccagacacagctgctctttgccagcatctcaac
ctcatccggcagctggccggcagcggctgcttcatcatcatcatcccacggacagtgatt
gatgggcttgacaggttgaagaaggaaaacgccggtgcgagggatggcatccgcttcctg
gagtctgaatttcgcaaaggcaacaggtacattcgctgccagaaggagtctggtcgaagt
tttgaaagagataaactgaagcgtcaggacatcgaagcctggcatttatacaagatggtg
gacagctgccgccagctcacagtctcccagagcaacggagacgaagatacggccggcatg
gtgaccattctgaccgaccatcaagtggaggatctttgcactcggtcggcagcgatgaag
tctgcgatccaggcggcgggttcggcgggcatggagctgaagaacatcgtggagttctac
cggcagtggaaggagatcggctga
DBGET
integrated database retrieval system
