Clinocottus analis (woolly sculpin): 137781548
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Entry
137781548 CDS
T10471
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137781548 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137781548 (cnot3a)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137781548 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137781548 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
Motif
Other DBs
NCBI-GeneID:
137781548
NCBI-ProteinID:
XP_068426471
LinkDB
All DBs
Position
Unknown
AA seq
948 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEELKRLIERHRFHI
LMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFIYDDLDLEDIPAALAA
TSPTGQGNLEDEMYLHSNSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSSTTSGSSSSSSLVSMASVVGGIPIVPPSSSLIGSFSSAVQQHQHQ
PVQQQQQPQPTNQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQTKP
SAPSNNNTPSPPSNPLLPASTAPSLTTPSTPSSSATNSQSQLTSVLTPTSSLGLGLGLGL
SKIGLMGTSSGNQMSGLGLGVHSSPLNTMAGLISGSTTAAYAQAAASGGLGLSSTTQSSI
SLDSSTSIPSSGSSGVTTNGALVGLGLLGSSPAHSSLSASILGLVPGLNVDPGASPLPPS
SVSTTAGVVGMMGGNGGNVSMVGGVGVNAAPARPPSGLKQNGSTSYSAIVAESSTESALS
TPSQSQSSQPSSLSSSTSQLMDNGPSLISSINLPPSSPSPSFSDSTPGGGSLLNGPHSYT
QASEALKAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRGRNDIFSSSSTAPCTPATSQ
PSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPT
LPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMW
FQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggtgagatcgatagatgtttgaaaaaagtagctgaa
ggtgtagaacagtttgaagacatctggcaaaagcttcacaatgcagccaatgcaaaccag
aaagaaaaatatgaggccgacctcaagaaagagattaaaaaactacagcggttgagagat
cagataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagtcgagaac
cgcaaacttatagagacgcaaatggagcggttcaaggtggtggaacgtgaaacaaaaaca
aaagcctactcgaaagaaggcttggggcttgctcagaaagtggatccagctcagagggaa
aaagaggaaacgggaacatggctaacaaatacaatagacactctaaatatgcaggtggat
cagtttgaaagtgaggttgaatctctttcggttcagacaagaaagaagaagggcgataaa
gataagcaggatcgtattgaggagctcaagaggttgattgagaggcatcgattccacatt
ctcatgttggagaccattttacgaatgctggataatgactcggtaccagtggatgcaatc
cagaagataaaggatgatgttgaatactacattgattcctctcaagatcccgactttgaa
gagaacgagttcatatatgacgacttagacctggaagatatccctgcagcattagctgca
acttctccaacaggtcagggtaatttggaggatgagatgtatctacactccaacagcact
cccacttccacaacctcttcttcacctattcctccatccccggccacttgcactgctgag
aattcggaggacgataagaaaagaggacgatcgacagacagtgaagttagtcagtcacct
gtgaagaatggcaccccatccttgctatcttcgttctcctcctcttccaccacctctgga
tcctcctcatcctcctcccttgtgtccatggcaagtgttgtcggaggcattcccattgta
cccccaagcagcagccttatagggagcttcagcagtgcggtgcagcaacatcagcatcaa
cctgtgcaacagcagcaacaacctcagccaaccaaccaaccgcagcagcagcagcagcag
caacaacaacaacagcagcaacaacaacaacagcaacaacagcaacaacaacaacaacag
cagcagcaacaacaacagcaacagcagcagcagcagcagcagcaacctcagacaaaaccc
tctgccccctcaaacaacaacacccccagcccaccaagcaatcctcttctcccagcctca
actgcaccctctctcaccacgcccagcacacccagttcatcagctaccaactctcagtct
cagctcacatctgtgctcacccccacatccagtttgggacttgggttgggactgggattg
agcaaaattggcctaatggggaccagcagtggcaaccaaatgtctggtttgggcctcggg
gtccactcgtctcctctaaacacgatggcagggctcatttcaggctccacaactgccgct
tacgcccaggcagcagcatcaggaggcttgggtttgagcagcaccacacagtccagcatt
tcactagacagcagcacttccataccctcctctggctccagtggagtcaccaccaacggg
gcgttggtagggctcggtttgctaggttccagcccggcccacagctctttgagtgcaagt
attctgggactggttcctggtctaaatgtagatcccggtgcttctccgttgcccccaagt
tctgtcagcactacagccggagtagttggcatgatgggaggcaatggagggaatgtcagc
atggttggaggagtaggcgtgaacgctgctcccgctagaccacccagtggactgaagcaa
aatggaagcacaagttacagtgctatagtggcagagagctcaacagaatcagctttaagc
acaccgagccagtcacaaagcagccaaccctcatctctcagctcttcaaccagtcagctg
atggacaatggtcccagtttaatcagctccatcaacctgcctcccagctctccgtccccc
tcgttctcagacagcacacccggaggagggagtcttctcaacgggccccactcctacaca
caggcctctgaggctctcaaggcccctgagcctctcagttctctgaaggcaatggctgag
cgagcagcgctgggatcgggcctggatggagagattcccaacctgcacctaacagacaga
ggtcggaacgatatcttctctagttcgtcgacagcgccctgcacacctgccacctctcag
ccgtccgtgtcggaagtcagcatccccccctcgcttggggtctgtccacttggccccacc
cctctccccaaagaccagctctaccagcaggccatgcaggaatccgcatggacacacatg
ccacacccctcagactctgagaggatcaggcaatacctgatgaggaatccgtgtcccacg
ttgcccttccaccatcagataccaccgcaccactcggactctatagagttctaccagagg
ctgtccacagaaactctctttttcatcttctactacctggagggcaccaaggctcagtat
ttgtctgccaaggctctgaagaaacagtcatggaggtttcataccaagtacatgatgtgg
ttccagaggcacgaggagccaaagactataaccgatgaatttgaacagggcacttacatt
tactttgactatgagaaatggggccagaggaagaaggaggggttcacctttgagtacagg
tacctcgaagacagagacctgcagtga
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