Clinocottus analis (woolly sculpin): 137781936
Help
Entry
137781936 CDS
T10471
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03013
Nucleocytoplasmic transport
cana03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137781936
03015 mRNA surveillance pathway
137781936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137781936
Enzymes [BR:
cana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137781936
5.6.2.5 RNA 5'-3' helicase
137781936
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137781936
mRNA cycle factors
Common to processing body (P body) and stress granule
137781936
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
nSTAND3
Helicase_RecD
ATPase
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
137781936
NCBI-ProteinID:
XP_068427065
LinkDB
All DBs
Position
Unknown
AA seq
1110 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQTQSQLDSQVNGPE
GILQNGDEPVVKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTSKKW
FCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADS
VVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKES
QTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKSIGHVIKV
PDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYH
KLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA
TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTSLKVVRLCAKSREAIDSPVSFLALHN
QTRNMDSMPELLKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGDP
RLARMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQS
LFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPD
KPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPNQIGIITPYEGQRSYL
VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL
TRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTI
NPGGRFMSTAMYDAREALIPGSVYDRSSNGRSSSMYFQTHDQIGMIGTGGSPMTSLNIPI
PFNLVMPPIPPPGYMGQINGPSAGRGGGMKGKAGSGGGGGGGTRGGRQRNRGNMGNHSGG
NGGSDRHGGHMSGSQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEF
KSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcgcagactctcacgttcctcgacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagacccagacccagacccagagccagctcgacagccaggtgaatggccctgaa
ggcatattgcagaatggggacgagcctgtcgtcaaagccagtcagctgcttgcagagctg
aactttgaggaggatgaggaggacacctactacaccaaggacctgcccctccatgcctgc
agttactgtggtattcatgatccagcctgtgtggtctactgcaacaccagcaagaaatgg
ttttgtaatggccgtggaaacacttccggcagccacattgtaaaccacctggtgagagca
aagtccaaggaggtgaccttgcataaagatggccctttgggggaaactgtactggagtgc
tacaactgtggctgtcgcaatgtcttccttctgggcttcatccccgccaaagccgactcg
gtagtggtgctactgtgcaggcagccatgtgccagccagagcagcctgaaggacatcaac
tgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctggctggtg
aaaatcccttcagagcaggagcagctcagggctcgtcagatcaccgcccagcagatcaac
aagctggaagaactctggaaggaaaatcccactgcgaccttggaggacctggagaagccg
ggtgtggatgaggagccccaacatgtgctgctccgctatgaggacgcctaccagtaccag
aacatattcggtcctcttgtgaagctcgaggctgactacgataaaaaactcaaagagtct
cagactcaagacaacatcactgtcagatgggatttgggcctaaataaaaagaggattgct
tatttcactcttcccaaaacagactcagacatgcggctgatgcagggagatgaaatttgc
ttgaggtacaaaggagacctggctcctccatggaaaagcattggacatgtcatcaaagtc
cctgataactatggtgatgagattgccatagagctaaggagcagtgccggggctccagtg
gagatcccacacaactttcaggtcgactttgtgtggaagtctacttcctttgacaggatg
cagagtgctctcaagacatttgcagtggatgaaacttcagtgtctggttacatctaccac
aagctgctgggacatgaggtagaggacgtggtcataaagtgtcagctgcccaaacgcttc
acggctcaaggcctgcccgacctcaaccactcacaggtgtacgctgtgaagacggtgctg
cagcgtccgctcagtctgatccagggtcctcctggcacagggaagacggtaacctctgcg
accatcgtctaccacttggccagacagggcaacgggccagtgctggtgtgtgctcccagt
aacattgccgtcgaccagctgacagagaagatccatcagacaagcctcaaggtcgtgagg
ctgtgtgccaaaagcagggaggccatcgactcgcccgtgtccttcctggcactgcacaac
cagacccgtaacatggacagtatgccagaacttctgaagctccagcagctgaaggacgag
accggagagctgtcctcctcagacgagaagcgctacagagctctgagacgcacagctgag
cgggagctgctgatgaatgccgatgtaatctgctgtacctgtgtcggggcaggggatcct
cgtctggccaggatgcagttccgctcaatcctgatcgatgaaagcacccaggccactgaa
cccgagtgcatggtgcccgtcgtgctgggggcgaaacagttgattctggtgggtgatcac
tgccagctgggccctgtggtgatgtgtaagaaggcagccaaagcaggcctgtcccagtct
ctgtttgagcgtctcgtagttttggggatccggccaatccgtctgcaggtccagtaccgc
atgcatccggccctcagcgccttcccctccaacatcttctatgagggctctctgcagaat
ggagtcactgccgcggaccgtgtgaagaagggctttgacttccagtggccgcagcctgac
aagcctatgttcttttatgtcacccaaggccaagaggaaatagccagctctggaacatcc
tatctcaacaggactgaggcatccaatgtggagaaaataaccacgaggttgctgaaagct
ggagcaaaacccaatcagattggtatcattacgccctacgagggacagaggtcctacctg
gtccagtacatgcagttcagtggatcgctccacaccaaactctaccaggaggtggaaatc
gccagcgtagatgcctttcaaggcagagagaaggacttcatcatcctgtcctgtgtgagg
gccaacgagcaccagggcatcgggttcctcaatgatcccagacgcctcaacgtggcactc
acaagggccaggtatggtgtgattattgtgggaaacccaaaggccctgtccaagcagcct
ctgtggaaccacctgttgaactactacaaggagcagaaggtcctggttgaagggcctctt
aacaatctgagggagagcctcatgcaattcagcaagccccgcaagcttgtcaacaccatc
aaccctgggggtcgctttatgagcacagccatgtatgatgccagagaagccctcattcct
ggatctgtttatgatcgcagcagtaacggacgttcgtccagtatgtatttccagacccac
gaccagattggcatgatcggcacaggtggcagtcctatgacttccctgaacatccccatc
cccttcaaccttgtgatgccacccatacctccacctgggtacatgggacagatcaatgga
ccctcagcaggtcgtggcggaggaatgaaaggcaaggcaggcagcggaggaggaggagga
ggcgggactcgcggtgggcgtcaaagaaaccgcggcaatatgggaaaccacagcggagga
aatggaggatcagaccggcatggaggccacatgagtggcagccaggatctgggctcgcag
cccttctcccaggggcctctgacgcagggctacatcaacatgagccagccgtctcagatg
agccagcccggactctcccagcctgaactctcacaggacagttacctaggagatgagttc
aagtcccagattgatgtggctctgtcccaggactccacctaccagggggagcgggcctac
caacacggcgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
