KEGG   Clinocottus analis (woolly sculpin): 137782082
Entry
137782082         CDS       T10471                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cana  Clinocottus analis (woolly sculpin)
Pathway
cana03030  DNA replication
cana03410  Base excision repair
cana03420  Nucleotide excision repair
cana03430  Mismatch repair
Brite
Enzymes [BR:cana01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     137782082 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     137782082 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     137782082 (lig1)
DNA replication proteins [BR:cana03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    137782082 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     137782082 (lig1)
DNA repair and recombination proteins [BR:cana03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     137782082 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     137782082 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     137782082 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 137782082
NCBI-ProteinID: XP_068427278
LinkDB
Position
Unknown
AA seq 1074 aa
MQRSIASFFQPKGKDQDVQKKAADEPVKKSKTKNKDVQKKAAAEPVKKPAKSPLKVQNGV
QEADSPVEKFAKRSRQILDSDDDDDEEEEEVVKEQVAAKGQEDKGDEKQKKDDVVFKALP
SPLSPPAGPVTPAGPVTPAGPVTPAGPVTPAGPVTPAGPVTPAGPVTPAGPVTPAGPVTP
ASSASPDTPNSISPSGIVRRKTARKMFPKRKLDESRSAGGESQKDEAEEEEGQQHKRPRV
ESSAGSADEPMEEGAKEESVKKAVTEANSPDEEAKRQKRGGGEQEEEEEERAKRKSSDEK
VKKTEGAENKNEVKQKDDEKGPVDAKKKKKVEKEEEEVEKDTQEQEESPKSQAARKQKEP
KEQKDKEPLKKAPISSFFAPRKAAVKAEKDEEEEVKKTSGERKSSAEETKDTKGESTAGQ
TDYNPTRAGYHPVDHACWKRGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLS
PDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVA
ESSRSNQRTMFQPASLTAGGVFRKLKEIAGMSGNSAMNKKIDIIKGLFVACRFSEARYIV
RSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVLDAGKGMSAESRRAWIEEKSLIL
KQTYCEMPNYDVILPVLLTEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAF
TCEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIISRIPKVMKDSVVSCVLDSEAV
AWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLK
ESFSEVEGEFVFARSIDSDNTDAIAEFLELSVRDSCEGLMVKTLEKDATYEIAKRSHNWL
KLKKDYLDGVGDTVDLCVIGAYMGRGKRTGTYGGFLLACYDEENEEFQSICKIGTGFKDE
DLEQHYKFLKEHILPKPRAYYRIDQSAEQPDVWLDAVQVWEVKCADLSLSPVYKAAMGLV
DPVKGVSLRFPRFLRIRDDKKPEDATSGAQIADLYKKQQQIQNQGDKVDPEDYY
NT seq 3225 nt   +upstreamnt  +downstreamnt
atgcagcggagcatcgcatccttctttcagcccaagggtaaggaccaggatgttcagaag
aaagccgcagatgaacctgtgaagaaatccaagactaagaacaaggatgttcagaagaaa
gcggcggctgaacctgtgaaaaaaccggccaagagccctctcaaggtgcagaacggcgtc
caggaagcggattcgcctgtcgagaagtttgccaaacgcagtcgacagatcctggacagc
gacgacgacgacgatgaggaagaggaggaggtcgtgaaagagcaagtcgccgccaaggga
caggaagacaaaggggatgaaaaacaaaagaaggatgacgtcgtcttcaaggcgcttccc
agccctctgtctcctccggccggccccgtgaccccggccggccccgtgaccccggctggc
cccgtgaccccggccggccccgtgaccccggccggccccgtgaccccggccggccccgtg
accccggccggccccgtgaccccggccggccccgtgaccccggccggccccgtgaccccg
gcctcttctgcttcacccgacaccccgaactccatctccccgtctgggatcgtcagacgc
aaaaccgcgaggaagatgttccccaagaggaagctcgacgagagccggagcgccggcggc
gagagccagaaagacgaggccgaggaagaggagggtcagcaacacaaacgaccccgagtg
gagagcagcgcagggagcgccgatgaacccatggaggaaggagcaaaagaagaaagcgtt
aaaaaggcagtgaccgaggccaacagccccgatgaagaggcgaagcggcagaagagagga
ggaggagagcaggaggaggaggaagaggagcgggcgaagagaaagagctctgatgagaaa
gtaaagaaaactgagggggcggaaaataaaaatgaagtaaagcagaaggatgatgagaaa
gggcccgtcgatgccaaaaagaagaagaaggtggagaaagaggaggaggaggttgaaaag
gacacgcaagagcaagaagagagcccaaaaagtcaagcggcgagaaagcagaaagaacca
aaagagcagaaagataaggagccactcaagaaagctcccatcagcagtttctttgctcca
agaaaagctgcagtgaaggcggagaaggatgaagaggaggaggtgaagaagacgagcggc
gagaggaagagttcagcggaggagaccaaagacacgaaaggagagtcgaccgcggggcaa
acggactacaatcccaccagggccggctaccaccccgtggaccacgcctgctggaagcgg
ggacaaaaagtgccgtacttggcggtggctcgcacctttgagaagattgaagaggactct
ggcaggctgaggaacatcgagacgctgtccaacctgctccgctccgtgctgctgctctct
ccagacgacttgttgtgctgcgtgtacctgtgtttgaaccagctgggtccggcctacctg
gggatggagctcggcgtcggcgagacggtgctgatgaaagctgttgctcaagccaccggg
cggcaattggacaaaatcaaggcggaggcgcaggagaaaggggatctgggcctcgtggcc
gagagctcccgcagcaaccagcgcacgatgttccagccggccagtctcacggcggggggc
gtgttcaggaaattgaaagaaatcgccggcatgagtgggaactcggccatgaataagaaa
atcgacatcatcaaaggcctctttgtggcatgccgcttttccgaggcgcgctacatagtc
aggtctctggctgggaagctgaggataggcctggctgagcagagtgtcctgtcggctctg
agccaggccgtgtgcctgaccccccctggacaaggtttcccccccgcggtgctcgacgcc
ggcaagggcatgagcgctgagagcaggcgggcctggatcgaggagaagagtctcattctc
aaacagacttactgcgagatgcccaattacgacgtcatcctccccgttctgcttacagaa
ggcatagacgagctgcccaatcactgcaagctcactccaggcgtgcctctgaggcccatg
ctggcccaccccaccaaaggcgtcggcgaggtgatgaagcggttcgacgaggcggcgttc
acctgcgagtacaaatacgacggagagcgcgcgcagattcacattctggagagcggcgag
gttcgagtgttcagccgcaaccaggaagacaacacaagcaaataccccgacatcatctct
cgcattcctaaggtgatgaaggactctgtggtttcctgcgtcctggactccgaggcggtg
gcctgggatcgcgagaagaaacagatccagcccttccaggtgctcaccacccgtaagaga
aaggatgtggatgcctcggagatcaaagtccaagtgtgtgtgtacgcttttgacctcctc
tacctcaacggagagtccctggtgcgacagccgttgtgtcggcgtcgggctctgctaaaa
gaaagtttctcagaagtggagggcgagttcgtgttcgcccgatccatcgactccgacaac
acagacgccatcgcagagttcctggagctctctgtccgagactcctgcgagggtctgatg
gtgaagactctggagaaggatgccacctatgaaattgccaagcgctctcacaactggctc
aagctgaaaaaggactacctggacggcgtcggggacacggtggacctctgtgtgatcggc
gcctacatggggagaggcaagaggacgggcacctacgggggcttcctgctggcctgctac
gacgaggagaacgaggagttccagtccatctgcaagatcgggacaggcttcaaggatgaa
gatctggagcagcattacaagttcttaaaggagcacatccttcctaaacctcgcgcctac
taccgcatcgaccagtcggcggagcagcccgacgtgtggctggacgccgtgcaggtctgg
gaggtgaagtgcgccgacctgtcgctgtcgcccgtctacaaggccgccatgggactggtg
gatccagtgaagggcgtctctctccggttccctcgcttccttcggatcagagacgacaag
aagcccgaggacgccacgagcggagcgcagattgctgatttgtacaagaagcagcagcag
attcagaatcagggagataaagttgaccctgaggattactactga

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