Clinocottus analis (woolly sculpin): 137782657
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Entry
137782657 CDS
T10471
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04510
Focal adhesion
cana04512
ECM-receptor interaction
cana04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137782657
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137782657
09142 Cell motility
04820 Cytoskeleton in muscle cells
137782657
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cana04147
]
137782657
00536 Glycosaminoglycan binding proteins [BR:
cana00536
]
137782657
Exosome [BR:
cana04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
137782657
Glycosaminoglycan binding proteins [BR:
cana00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137782657
Hyaluronan
Extracellular matrix or blood plasma proteins
137782657
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
137782657
NCBI-ProteinID:
XP_068428247
LinkDB
All DBs
Position
Unknown
AA seq
1039 aa
AA seq
DB search
MAMIAGFIFLCMLQTTIPQGLTPRGPRPIPGRGDSPNPTPPPLQPIPRPQGCATGIIDCP
IKLFFTLDTSETIALQESPPGSLVKKVMEFTKMFAQRLSDVEYRGQIQISWSIGGLNFSE
SQHVFSPFTTKENFIRNLNGIIYEGKGTHTDCALERMTHHMTHHFSGTKAVLFSVVITDG
HVTADRCGGIKAMAEKAREKGIKIFSVAASRSIDESGMREIASSIPEVYREDYIVVDIVD
GKPEIKTESIDRIIKIMKHQAYLQCFEQKCLATPGLPGPRGPQGPKGMKGDRGYIGPKGA
RGRQGDPGIEGPIGQPGPKGEIGLIGDKGELGSGGAKGVAGASGRNGTDGQKGKIGRIGA
PGCKGDGGDKGPDGYHGEAGDTGPPGDNGEKGDSGHPGKSGPPGLRGNQGTKGENGNPGN
PGPPGQKGSVGRPGPPGKRGESGRRGDAGPKGGQGPDGLKGEKGELGPQGGRGRSGEYGL
KGGKGDQGLPGSRGQPGGSGDPGGNGSMGNSGDPGPRGDSGPPGPKGDNGRPGFNYPGTR
GSTGDRGDPGRRGPRGGRGECGAKGEAGDNGTPGEPGEQGVLGESGPRGPRGDPGPDGNP
GPVGDPGLNDCDVMTYIRETCGCCDCEKRCGALDIVFVIDSSESVGLTNFTLEKNFVINT
INRLGSMASDPASSTGTRVGVVQFSHNGTFEAIRLNDPNVNSMSAFKTAVKKLQWIAGGT
FTPSALKFAYDHLIRDGKRAQAKVSVVVITDGRFDPRDNEDLLNYLCNNNVVVNAIGIGD
MFQKKQDDEILVSIACKKKERVTGMKNYVDLVAEDFIEKMETVLCPDPVIVCPDLPCRRE
PDVAPCVQRPVDLVFMLDGSERLGMDNFRQVREFVQKVADRLGLADSKNDRMRARLALLE
FGKETENHVAFPLTHDPAVIADGIARLPYLDSSSSIGPAILYTIDKIVGKGNVRKTRRNA
EVSFVFITDGVTDGNNLDEAVSAMRGAQVVSMVIATRNDVDQKVLMKLAMDDKDAIFKGK
DFSDLSTSSLFDRFIQWVC
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgattgcagggttcatctttctgtgcatgctccaaactacaattcctcaaggt
ctgacccctcgtgggcccagaccaatacctgggcgaggtgatagtccaaatccaacacca
cctccactccagccaatacccagacctcaaggttgtgcgaccgggataatcgactgtccc
atcaaactgtttttcaccctcgacacctctgagaccatcgccttacaggagtctccacct
gggagcctggtgaaaaaggtcatggagttcaccaagatgtttgcccagaggctgtctgat
gtggagtacagaggccagatccagatctcctggtccataggaggcttgaacttctcggag
tcgcagcacgtcttcagtccgttcacgaccaaggagaacttcatcaggaacctcaatggg
attatatacgaaggcaaaggcacccacaccgactgcgcccttgaaagaatgactcaccac
atgacccaccacttctccgggacgaaggccgtcctcttctctgtggtcatcactgacggg
catgtgacagcagatcgatgcggggggatcaaggcaatggcagagaaggcccgggagaaa
ggcatcaaaattttctccgtggcagcgtcaaggagcattgatgaatcaggaatgagggag
atagccagctccatccctgaagtgtatcgcgaggactacatagtcgtggacatcgttgat
gggaaaccagaaataaagacagaatccatcgatcgtatcataaagattatgaaacatcaa
gcctatttacagtgctttgaacaaaaatgcctggcgactcctgggctccctggaccaaga
gggcctcaaggtccaaaaggtatgaaaggagacagaggttacattggaccaaaaggagca
aggggtcgacaaggtgatcctggcattgaaggtccgattggacaacccggtccgaaggga
gagatcggcttgataggtgacaagggtgaactcggatcaggtggggcaaagggtgtggca
ggagcatctggcaggaatggaaccgacggtcaaaagggtaaaatcggccgaattggagct
cctggttgcaaaggtgatggaggtgacaagggaccagacggttaccatggggaagctggt
gacactggaccacctggtgataacggagaaaagggagactcgggccaccctggaaagtcg
ggtccacccggccttcggggtaaccaagggacaaagggggaaaatggaaatccaggaaat
ccagggccaccgggacaaaagggttctgtggggcgtcctggcccacctggaaaaagaggc
gaatcgggaagaagaggagacgctggaccaaagggaggacaaggtcctgatgggctaaaa
ggagagaagggagaactcgggccacagggaggcagaggccgatccggagaatatggactg
aagggcggaaagggagaccaaggactaccaggatccagggggcagcctggaggatcaggg
gaccccggaggaaatggcagcatgggaaattctggggatcctggaccaaggggagactct
gggccacctggaccaaaaggcgacaatggaagaccaggattcaactatcctggaacgaga
ggatccaccggggacagaggggatccagggagaagaggacccagggggggcagaggggaa
tgtggtgccaaaggagaagctggagataacggaacaccaggagagcctggagaacagggt
gtgctgggggagtcaggaccacgaggacccagaggagatcctggacctgatgggaaccca
ggaccagtgggcgatcctgggcttaatgactgtgatgtcatgacttacatcagggagacg
tgtggttgttgtgactgtgagaagcggtgtggagctctggatattgtatttgtaattgat
agctcagagagtgttgggctgacaaacttcaccctggaaaagaactttgttatcaacacc
atcaacaggttgggatctatggccagcgaccctgcgtcgtcaaccggcacaagagtcgga
gttgttcaattcagtcacaacgggacctttgaggccattcgtctcaacgacccgaacgtc
aactccatgtctgcctttaaaacggcagtgaagaagctacagtggatagccgggggcacc
tttacaccctctgctctcaagttcgcctacgatcacctcatcagggacggcaagagagcc
caagccaaagtatccgtggtggtgatcacagacggccgctttgacccgcgtgacaatgag
gatttgctcaattacctttgcaacaacaatgtggtggtgaacgccatcgggatcggtgac
atgtttcagaagaagcaggatgacgagatcctggtgtcgatcgcgtgcaaaaagaaagag
cgcgtcactgggatgaagaattacgtggacttggtggccgaagacttcatagagaagatg
gagactgttctctgccctgatcctgtgattgtgtgccctgatctcccctgtagacgtgag
ccggatgtagctccctgtgtccagcggccggtggatttggtatttatgctcgatggctcg
gagcgccttgggatggacaatttccggcaagtccgtgaatttgtgcagaaggtggcagac
aggctgggactggccgacagcaagaatgatcgtatgcgagcccgtttggcgttactagaa
tttggcaaggagactgagaaccacgtggcttttcctctcacgcacgaccccgctgtcatc
gccgacggcatcgcgcgcctgccttacctcgattcttcgtcaagcatagggcccgccatc
ttatatactattgacaaaatcgtaggcaaaggaaatgttcgcaagacgagacgcaacgca
gaggtttcgttcgttttcatcacagacggcgtcactgacggcaacaacctggacgaggcc
gtgagtgccatgcgcggggcgcaggtcgtttccatggtgattgccacaagaaatgacgtt
gaccaaaaagtcctaatgaagctggccatggatgacaaggacgccatcttcaaaggaaaa
gacttctctgatctgtccacgtccagtttgtttgaccgctttatccagtgggtatgttaa
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