Clinocottus analis (woolly sculpin): 137782788
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Entry
137782788 CDS
T10471
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137782788 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cana03041
]
137782788 (sf3b1)
03036 Chromosome and associated proteins [BR:
cana03036
]
137782788 (sf3b1)
Spliceosome [BR:
cana03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
137782788 (sf3b1)
Complex B
137782788 (sf3b1)
Complex C
U2 SnRNP specific factors
137782788 (sf3b1)
Chromosome and associated proteins [BR:
cana03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
137782788 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
137782788
NCBI-ProteinID:
XP_068428517
LinkDB
All DBs
Position
Unknown
AA seq
1319 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLEEGEQGVGLDSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRLQLVEKAKAG
ELKAVNGSAASAAAAAKRKRRWDQTADQTPTNTTPKKMSSWDQADSSAETPGHTPGHTPA
HTPSSTRWDETPGRAKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGAT
GSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQ
MGSSTPLMTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELD
AMFPEGYKVLPPPAGYVPIRTPARKLSATPTPLGGMTGFHMQVEDRTTKQMNDQPSGNLP
FLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKARE
FGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDE
DYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLL
PFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTIS
ALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYY
TREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMAL
DRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADID
HKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSA
KVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG
MHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLEL
LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP
FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHR
QTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCR
MLQYSLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNMYVRCELDYAL
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagacatcgaggcccagatcctggagatccagggg
atgaaggcgaccctgctggaggaaggcgagcagggagtgggccttgattccaccggcttc
tttgaccaggagatctacggaggcagcgacagccgctttgccggatatgtcacttccatt
gctgctaatgaacaggaagatgacgatgaagaggattcatcaacaagcttgttgggacaa
aagaagcccgggtaccatgcgccagtggcaatactcaatgccattccccagtcagacgag
caatacgacccatttgcagagcatcgtccgcagaagatcgcagagcgggaagatgaatac
aaagcccgacgcagacagatgatcatctcaccggagcggctcgaccctttcgcagatggg
ggcaaaacgccggaccccaagctgcaggtcaggtcgtacgtggacgtcatgttggagcaa
aacctgtccaaagaggagagggagatccgtctgcagctggtagagaaggccaaagccggg
gaactgaaagccgtcaacgggtccgctgcctctgcggccgctgccgcgaaacgtaagcgt
cgctgggaccagaccgctgaccaaacccccacgaacactacgcccaaaaagatgtccagc
tgggaccaggcggactcgtccgccgagactccgggccacaccccgggccacacccccgca
cacacgccctcaagcacccgatgggacgaaacccccggccgcgccaagggcagcgagacc
ccgggcgccacccccagcacccgcatgtgggaccccactcccagtcacacgcccgccggc
gccgccaccccgggcagggacacgcccggccacgccacacccggccacggcggagccacg
ggaagcgtacgcaagaaccgctgggacgaaacccccaaaacggaacgggagacccccgga
cacgggagcggctgggccgaaacgccgcgcacggacaggggcgacgagtcagtgggcgag
actccgactccgggggccagtaagaggaagtctcggtgggacgaaacccccgccagccag
atgggatcctctacgccgctaatgaccccgggaaaaactcccatcggaacgcccgccatg
aacatggcgaccccgacaccgggtcacctgatgagcatgactccagagcagctgcaggcg
tggcggtgggagagggagatcgatgagaggaaccgtcctctcacagacgatgagctggac
gccatgttcccagagggatacaaggttttgccgccgccagcgggctacgtgccgatccga
actccggcccgtaagttgtcggccacgccgacgcccctcgggggcatgacgggcttccac
atgcaggtggaggaccgcaccaccaagcagatgaacgaccagccctcaggaaacctgccc
ttcctcaaacccgatgacatccagtatttcgacaaactgctggtggaggtggacgagtcc
acgctgagccccgaggagcagaaagagaggaagatcatgaagctgctgctgaagattaag
aatggaacaccgcccatgagaaaggccgctctgcgtcagatcacggataaagctcgtgag
ttcggcgccggcccgctgttcaaccagatcctcccgctgctcatgtcgcccaccctggag
gaccaggagcgccacctgctggtcaaagtcatcgaccgcatcctctacaaactggacgac
ttggttcggccatacgtacacaagatcctggtggtgattgagcccctgctgattgatgag
gactactacgccagagtggagggtcgagaaatcatctccaacttggcaaaggccgccggt
ttggccaccatgatctccacgatgagacccgacatcgacaacatggacgagtacgtcagg
aacaccacggcccgagccttcgccgtggtggcctcggctctcggcatcccctccctcctg
ccgttcctcaaagccgtgtgcaaaagcaagaagtcctggcaggcccggcacacgggcatc
aagatcgtgcagcagatcgccatcctcatgggctgcgccatcctgccccacctccgcagc
ctggtggagatcatcgaacacggcctggtggacgagcagcagaaggtcaggaccatcagc
gccctcgctatcgccgccctcgccgaagccgccacgccctacggtatcgagtctttcgac
tctgtcctcaagcctctctggaagggtatcaggcagcacagaggaaagggtctggccgct
ttcctcaaagccatcggttacctgatcccactgatggacgccgagtacgcaaactactac
accagggaggtgatgctgatcctcatcagagagttccagtcccccgacgaggagatgaag
aagattgtgctcaaggtggtgaagcagtgttgtggcaccgacggcgtggaagccaactac
atcaagactgagatcctgcctcccttcttcaagcacttctggcagcacaggatggctctg
gacagacgcaactacagacagttggtggacacaacggtggagctggccaacaaagtggga
gcggcggagatcatctctcgcatcgtcgatgacctgaaggacgaggcggagcagtacaga
aagatggtgatggagaccatcgagaagatcatgggcaacctgggcgccgccgacatcgac
cacaagctggaggagcagctgatcgacggcatcctgtacgccttccaggaacagaccacc
gaggactccgtcatgctcaacggcttcggcacggtggtgaacgccctcggcaagcgcgtg
aagccctacctgccgcagatctgcggtacggtgctctggcgtctcaacaacaagtcggcc
aaagtgcgtcagcaggccgccgacctcatctcccgcacggccgtggtgatgaagacttgc
caggaggagaagctgatgggtcatttgggtgtggtgctgtacgagtacctgggagaggag
tacccagaggttttggggagcatcctgggagcgctgaaggccatcgtcaacgtcattggt
atgcacaagatgactccgcccatcaaagacctgcttcctcgcttgactcccatcctgaag
aacagacacgagaaagtgcaggagaactgcatcgacctcgtgggccggatcgccgacagg
ggggctgaatacgtgtcggccagggagtggatgaggatttgttttgagctgctggagctg
ctgaaggctcacaagaaagccatccgcagagccaccgtcaacacgttcggttacatcgcc
aaagctatcggcccgcacgacgtgttggccactctgctcaacaacctgaaggtccaggag
cgccagaaccgagtctgcaccaccgtggccatcgccatcgtcgccgagacctgctcgccg
ttcacggtgctgccggcgctcatgaacgagtaccgcgtgcccgagctcaacgtgcagaac
ggcgtgctcaagtccctctccttcctgttcgagtacatcggggagatgggcaaagactac
atctacgccgtcacgccgctgctggaggacgcgctcatggacagagatctggtccacagg
cagacggccagcgccgtcgtccagcacatgtctctgggcgtctacggcttcggctgcgaa
gactccctcaaccacttgctcaactacgtgtggcccaacgtgttcgagacgtcgccccac
gtgatccaggcggtcatgggcgccctggagggcctgcgggtcgccatcgggccctgccgc
atgctgcagtacagcttacagggtttgttccacccggcccggaaggtgcgagacgtctac
tggaagatctacaactccatctacatcggctcgcaggacgcgctcatcgctcactacccg
caagtctacaacgatgacaagaacatgtacgtccgctgcgagctggactacgccttgtaa
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