Clinocottus analis (woolly sculpin): 137783007
Help
Entry
137783007 CDS
T10471
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a
KO
K06823
collagen type XVIII alpha
Organism
cana Clinocottus analis (woolly sculpin)
Brite
Exosome [BR:
cana04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
137783007 (col18a1a)
Proteoglycans [BR:
cana00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
137783007 (col18a1a)
Glycosaminoglycan binding proteins [BR:
cana00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137783007 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
137783007
NCBI-ProteinID:
XP_068428848
LinkDB
All DBs
Position
Unknown
AA seq
1427 aa
AA seq
DB search
MRTQFTVLFLLTLWVVHSDAWFWDWTGTTTFPPTVDHEGSGTPAGSGEPPSDNLASVGAE
IIDEGHGVQNIVQAWDATTEGPRLATLMPTTQPEHERESEKETAGISSRIRKPEDTGVSL
QQLIGDPPPNTITRVYGPDDRPSYVFGPDSNTGQLARAHLPSPFYRDFALDFNLKPTSER
GGVVFSVTDAAQKIMYVGVKLSPVQAGNQNIILYYTEPDSQTSYEAARFPVPAMTDTWTR
FSIAVSDDTVKFYLNCGTEPQVMRLERSPDEMELQTGAGVFVGQAGGADPDKFLGVIGEL
RLVGDPRAAKRLCEDDEDDSDMPSGEGSGYEETRHSQATGEKHRTTPPPASRPIQQPPLS
SKDDVSRETGPSGGRGEKGDRGEAGLKGDRGPIGPKGDAGSGSRGGARGEKGEPGETGVK
GSAGFGYQGKKGEPGSPGAAGPPGPPGVATEYSVSSDGSVSTRGPGPRGPPGAAGPQGPP
GADGEPGDPGEDGKNGPDGPPGFPGTPGDPGTKGEKGDRGEGQPGPRGLPGPPGLPGTGL
RPTFVDMEGSGFPDPESIRGLPGLPGPPGAPGPPGPTSPSTAGAASGSGAFGPPGKDGAP
GQPGLPGLPGADGRPGALGPNGEKGDSGDLGLPGAVGEKGSRGDPGLPGTSGETGLAGLP
GPIGPVGPPGLPGPPGPSYRVGFDDMEGSGGGFSNALPGVRGPEGRQGSSGLPGLPGKAG
LPGMPGQKGSDGLTGRDGRPGLDGFPGPQGPKGDSGDKGERGEPGRDGTAIQGPPGPPGP
PGQIIYQTSDNVNGFVGNDGPQGGDGLPGQAGFPGPIGPKGDRGDPGLPGYGNKGEKGEP
GLAIGPDGNLLHLEGLTGPKGDRGTPGPVGPTGQYGPAGIKGEMGMPGRPGRPGVNGYKG
ERGEPGVGYGYPGVPGQPGPPGPPGPSIPLDRFNRYDETSRNYPATKGEKGESGDRGIPG
IPGTTSNFDIYTFKNELKGERGELGMKGEKGEPSSGYYDPRFGGVQGQPGPPGKPGLDGP
KGEPVSGPPGPQGPPGTPGIGYDGRPGPPGQPGPPGPPGSPSLPGAYRPNHSLNVPGPPG
PPGAPGSPGHSSGVTVLRSYDTMIATARRQAEGSLIYIIDKADLYLRVRGGLRQVMLGDY
SPFFRDLENEVAEVQPPPVIQYPQSQDQSHSNGAGHYSQGGSAVRPIEPPPRPPVEPRYP
PVYDPRFPDPRHTGQTDGRLATQQTENRYPVTPRRPSPPAAQPVSHVEPSAPGLHLIALN
APQSGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRDSTPIVNLKH
QELFSSWESLFGDVSKMRENVPIYSFDGRDIVRDSAWPEKMVWHGSSNKGHRQTDHYCET
WRAGDRAVSGLASSLQSGRLLQQTSSSCSGSYIVLCIENAFTTHSKK
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaggacccagttcacagttttgtttttgttgaccctgtgggtggtccactctgatgcc
tggttctgggactggactggcactacaactttccccccaacagtggaccacgaggggtct
ggcactccagcaggtagcggagagccaccgtcagacaatcttgcaagtgtcggagcggag
atcattgacgagggacacggggtccagaacattgtgcaggcttgggatgcgaccactgaa
ggacctcgactggccactctaatgcctacaacgcaaccggagcatgagcgtgaatcagaa
aaggaaacagcggggatttcatctcgcatacgcaaacctgaagacactggggtctccctg
caacagctgattggggatcctcccccaaataccatcacccgggtctacgggcccgacgac
aggcccagctatgtcttcggccccgactccaacacgggccagctggcccgcgcgcacctg
ccgagcccgttctaccgggacttcgccctcgacttcaacttgaagcccaccagcgaacgc
ggcggcgtcgtcttctccgtcacggacgccgcgcagaagatcatgtacgtgggcgtcaaa
ctgtcgccggtgcaggccggcaaccagaacatcatcctgtactacacggagccggactcg
cagacctcgtacgaggcggccaggttccccgtgcccgccatgacggacacctggactcgt
ttttccatcgccgtgagtgacgacacggtgaagttctacctcaactgtgggacggagcct
caggtgatgcgactcgagaggtcgccggacgagatggagctgcagaccggcgccggggtc
ttcgtcgggcaagcgggaggagccgatcctgacaagtttctgggggtgattggtgagctg
aggttggttggagacccccgtgctgctaagaggctctgtgaagacgatgaagacgactct
gatatgccttcaggggaaggaagcggctatgaagaaaccagacactcacaggcaaccggg
gagaaacatagaacgactcctcctccagcttcccggcccattcagcagccaccgctgagc
agcaaagacgacgtctcaagagaaacgggtccatccgggggaagaggagaaaagggcgac
cggggggaggcggggctgaaaggagaccggggtccaatcgggccaaagggagacgccggc
tccggctcgcggggcggagcccgcggagagaagggggaaccaggtgaaacgggagtaaag
ggcagcgcaggctttggctaccaagggaagaagggagaacccggctcacccggagcggcc
ggtccccccggcccgccgggcgtcgccaccgagtactcggtcagcagcgacggctcagtt
tctacaagaggccccggaccccgaggcccgccgggcgccgccggcccccaggggccaccg
ggagccgacggagagccaggggatcctggtgaagatggaaaaaacggtcctgatggacca
cctggcttcccaggaaccccaggtgaccctggaacgaaaggagaaaagggcgaccgtgga
gagggtcaacctggccccaggggactccctggacctccaggactcccaggaaccggactc
agacccacttttgtggacatggaaggctctgggtttcctgatcctgaatccattcgggga
ttgcctggcctaccaggtccccctggtgcccccggtccacctggccccactagtccctct
actgccggagcggcatcaggttctggggcattcggaccaccgggaaaggacggggcgccc
ggtcaacctggcttgcctggtttgccgggtgctgatggacgcccaggagctctgggtccc
aatggagaaaagggggattcaggcgatctgggtcttccaggagcagtcggagagaagggg
tctcgaggagaccctggtttaccgggaacctccggagagactggactggctggtttgcct
ggaccgatcggaccagttgggccaccaggtcttccggggcctccgggaccaagctatcgt
gttggatttgatgacatggagggctctggtggagggttcagcaatgcactgcctggcgtc
cgaggacctgagggaagacagggttcttctggcttgcctggacttccgggcaaagcgggg
ttgcctggcatgccgggtcagaagggcagtgacggtctcacaggaagagacggacgtccg
gggttggatggcttccccggacctcagggaccgaagggggacagcggcgacaaaggagaa
aggggtgaacccggtcgagatggaaccgctatccaaggaccacccgggccgcccggacca
cctggacaaatcatctaccagacatctgacaatgtgaatggttttgttggcaatgatggg
cctcagggaggagatggtttacctggccaagctggattccctggtcctattggaccaaag
ggtgacaggggagaccctggcctgccgggctacgggaacaagggcgagaaaggtgagccg
ggcctggccatcggacctgatggaaaccttctgcatctggaagggctgaccggtccaaag
ggagaccgaggaacacctggacctgttggacccactggccagtatgggcctgctggaata
aagggtgaaatgggaatgcccggaagacctggtcgccctggtgtgaatggttacaagggt
gagagaggagagccaggagtcggctatggctacccgggagtccctggacaaccaggacct
cctggacctcccggaccatccattcccttagatcgcttcaaccgctatgatgaaacttca
aggaattacccagcaactaaaggggaaaaaggagagagtggggaccgaggaattccagga
atcccaggaaccacttctaatttcgacatttacacattcaagaatgaactgaagggagag
cggggagaactgggcatgaagggggaaaagggagagcccagtagcggatattatgaccca
cgttttggaggagtacaaggccaaccggggcctcctggaaaaccaggcctggacggtcca
aagggagaacctgtttcgggtcctcctggaccccagggaccaccagggacaccagggatc
ggttacgatgggcgtccaggtcctccgggacaacctggacctccaggaccaccaggatct
ccctcacttcctggagcatatcggcccaatcactccctcaatgttcctggacctcctggt
cctcctggcgcccctggaagtcctggtcactcttctggggttactgttttacggtcatat
gacacaatgatagctactgcgagacgccaggcagagggcagcctcatctacatcattgac
aaagccgacctctacttgagagtgcgcggtggattgcggcaagtcatgcttggagactac
agtccgttcttcagagatctggagaacgaggtggcagaggtccagcctcctcccgtgatc
cagtacccccagtcccaggaccagtcccacagcaacggagccggccattactcgcagggc
ggttctgccgtacgacccatcgagcctccgccacgcccgcccgtcgagcccaggtacccc
ccggtgtacgaccccagattcccagacccgagacacacgggccagacggacgggagactc
gccacgcaacagaccgagaacagatacccggtgacgccgcggcgacccagcccgcctgca
gcgcagcccgtcagccacgtggagccctcagcacccggactccatctcatcgccttgaac
gcccctcaatccggtaacatgcggggaatccgcggggcagacttcctgtgcttccagcag
gcccgcgccgtgggcctgaagggaaccttcagagcgttcctgtcctccaagcttcaggac
ctctacaccatcgtccgcaggtcggaccgggacagcactcccatcgtgaacctcaagcac
caagagttgttcagtagttgggagtctctctttggtgatgtgagcaaaatgagggagaac
gtaccaatctactccttcgatggtagagacatcgtcagggacagcgcatggccagagaaa
atggtctggcacggatcgagcaacaaaggccaccggcaaacagaccactactgtgaaaca
tggcgggcgggcgaccgcgccgtgagcggtctggcatcgtcactacagagcggccgcctc
ctgcagcaaacctccagcagctgctccggctcctacatcgtcctctgcatcgagaacgcc
ttcacaacacactccaaaaaataa
DBGET
integrated database retrieval system
