Clinocottus analis (woolly sculpin): 137783301
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Entry
137783301 CDS
T10471
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03015
mRNA surveillance pathway
cana04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137783301 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
137783301 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cana03021
]
137783301 (sympk)
03019 Messenger RNA biogenesis [BR:
cana03019
]
137783301 (sympk)
Transcription machinery [BR:
cana03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137783301 (sympk)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
137783301 (sympk)
U7-dependent histone pre-mRNA processing factors
137783301 (sympk)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_MROH2B_C
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
137783301
NCBI-ProteinID:
XP_068429228
LinkDB
All DBs
Position
Unknown
AA seq
1225 aa
AA seq
DB search
MEFTSDDEGSQSIPHVVDMTTSERVVDLLNQAALIPTDEKLNVLKQVQELIINKDPSLLD
NFLDELIAFQTDKSIEVRKFVIGFIEEASKRDNELLLRLVANLNMLLKDDSVNVVKKAIL
TLTQLYKVSLQWLVRSKAVSERQEACWDLVTQMKGDVLALLDSENDGVRTHAIKFTESLI
ITLSPRTPDSDVPKRQESDISLDKVPRDHSYIRYDVLCEEGKTALEKLLKFMVHPAITSI
NLTTTLGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKH
PCSLEFQGQIGTLLLDLGMPQSEITRSTPAPREQRKRPRHEEYTEGKKVKMEPALNEDDE
DKEEPAPLSVPKPVALPVAQSAIDVTAEFLHPLLSPANVANLVLISMVYLPDIMPASFQA
TYTPVESAGTDAQIKHLARLMATQMTAAGIGPGLEQSKAREDDAVKNEGNDEDAIAKDPF
IKRKVPACMVGQAISVLGGYEKEKTPPPEAPAIVKRLPEPILPTGQTKMAGPSGRKKVFR
LSDVVQPLADVEIEKLTSKAVRRILHSEKTIAQSGMSHVRVKLLSKLVTQFEGTMKEDVL
QFILEDIRTRSDLAFSLLYQEYNTYLSHLPAGQLGSYDHCLYTLLSGLQEKPEQRDGLFT
KLVLEAPLITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEK
EKVRTTALSFLKRMYEKDHLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVASPWTEE
TVRQCLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLV
ENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQ
ALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKA
TNLCFGEKNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIV
KQVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTSVFERCSEMRDPLLQHVLSFTPH
QQAHIPVSIMSVLEAHKKPEPKPVEPVVEKEMEPVPAPVEEQQAPTVTPERPDTPEPPQP
AVMKEEEEEPMEHEEPAPAIQEETVDTVSQEELTRAEETQSSQPEPAEEPMEESRPEPSD
LQQPVNEAEADAAEAEAGSGNEDVE
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggagtttacttcagatgatgaggggagtcagtccatcccccacgtcgtcgatatgacc
accagtgaaagggtggtggatctgctaaaccaggccgccttgatacccacagatgaaaag
ctaaatgtactcaaacaggtccaggagctcatcattaacaaggatccctctcttcttgac
aatttcttggatgagttgatcgcctttcagaccgacaagtctatcgaagtgagaaaattc
gtcattggattcattgaggaagcatctaaaagagacaatgagctcctcctcagactggtc
gccaatctgaacatgctgcttaaggatgacagtgtgaacgtagtgaagaaagccatcctc
acactcacacaactgtacaaagtttccctgcagtggttggttcgctctaaagccgtatca
gagaggcaggaggcctgctgggatctggtcacacagatgaaaggggatgtcctggcctta
ctggactctgaaaatgacggcgttcgcactcacgccatcaagttcacggaatcattaatc
atcactctgtccccacgcacgccagactctgacgttcccaagcgacaggagagtgacatc
agcctggacaaagttcccagagatcactcttacattcgctacgatgtattgtgtgaggag
gggaagactgcgctggagaagctgctgaagttcatggtccatccggccattaccagcatt
aacctcaccacgacacttggctccctcgccactatcgcccgtcagaggccaatgttcatg
tcggaggtggtgcaggcctatgagacattgcatgcaaatctgccacccacgctggccaag
tctcaggtcagcagcgtgcgaaagaacctgaagctgcacttggtggcggtcctcaagcat
ccctgcagtctggagttccagggtcaaattggcactctgctgctggacctgggaatgccc
cagagtgaaataacacgctcgactcctgcaccgcgtgagcagcgcaaaaggcctcggcat
gaagaatacaccgagggaaaaaaggtcaagatggagccggcgctgaatgaggatgatgag
gacaaggaagagccggccccgctctcggttcctaaaccagtcgctcttccagtcgcgcag
tctgccattgacgtcacagctgagttcttgcacccactgctctctcctgccaatgtggcc
aacttggtgctcatcagcatggtgtatctgcccgatatcatgccggcatccttccaggcc
acatacacacctgttgagtcagctggcactgatgcccaaattaaacatctggccaggttg
atggccacgcagatgactgcagccgggatcggtccaggactggagcagagcaaagccaga
gaagacgatgccgtgaagaacgaaggcaacgacgaggacgctatcgctaaagatccgttc
atcaagcgcaaagttccagcttgcatggtgggacaagccatctccgtgctgggaggttac
gaaaaagaaaagactccgcccccagaggctcccgccatagtcaagaggcttcctgaaccc
atccttcctacgggacaaaccaaaatggccggtccaagtgggaggaaaaaagtgttccgg
ttgtccgacgtcgtccagcctctagcggacgtcgagatcgaaaaactaacctccaaagca
gtcagacgcatcctgcattcagagaagacgattgctcaaagcggcatgtcccatgtccga
gtgaagctcctctccaagcttgtgacgcagtttgaagggacgatgaaagaagacgtgctg
caatttattctggaggacatccggacgaggagcgacctggccttttctctcctctaccaa
gagtacaacacttacctcagccacctgcccgccgggcagctgggcagctacgaccactgt
ctctacactctgctgtcgggcctgcaggagaaacccgagcagagggatggactcttcacc
aagctggtactggaggctcccctcatcacagaatcggccttggaagtaatccggcgctac
tgtgaggacgagtctcgggtgtatttgggcatgacgactctgaaggagctcattgtcaaa
cggccctcgaggcagtttcagtacctgcacgttcttctggatctcagctcgcatgagaaa
gagaaggtgcggaccactgccttgtcttttctcaagcgcatgtatgaaaaagaccacctc
agggactacattgagaagtttgccctgaactacatgcagcttctggttcatcccaaccct
ccatctctgctctttggggctgacaaagatacagaggtggcttccccgtggactgaagag
actgtgagacagtgtctgttcctctacctgtccctgctgccgctgaaccaccggctggtc
cacgagctggcgtctgtctacaccgaggccatcgcggacatcaaacgcagcgtgcttcga
gcgatagagcagcccatccgtgggatggggatgaactctcctgagctgctgctcttagtt
gaaaactgtcctaaaggggcagagactttagttacccgctgtctgcacatactgacagat
aaagtgcctccatctccagagctggtggagagagtacgagacctttaccacaaacgagtt
ccagacgttcgcttcctaattccagtcattaacggccttgaaaagaatgaagtcatccag
gctctccccaagctgatcaagctcaaccccatcgtagtgaaggaggtgttcaaccgcctc
ttaggcacgcagcacagtgagggaagttcatctgtgtcccctctgactcctggagacctg
ctgattgctttacacaacatagattcaaccaaatgtgacatgaagtccatcattaaagcc
accaacctgtgctttggggagaaaaatgtgtacacctctgaggttttggcggtggtgatg
cagcagctgatggagcagagtcccctccccatgctgctcatgcgtaccgtcatccagtcc
ctcaccatgtatccgcgactgggcggcttcgtcatgaacatcctgtcccgcctcatcgtc
aagcaggtgtggaagtatcccaaggtgtgggagggattcgtgaagtgctgccagaggacg
aagcctcagtcgtacagcgtgctgctgcagctgccgcccgctcagctgaccagcgtgttc
gagcgctgctcggagatgagagaccctcttctgcagcacgtcctgtccttcacacctcac
cagcaagcgcacatacccgtctccatcatgtcggtcctggaagcacataaaaagccagag
ccaaaacctgtagagccggtcgtggagaaagagatggagccagttcctgccccagttgaa
gaacaacaggctcctactgtgacgccggagcggcccgacacgccagagccgccacaacca
gctgtgatgaaagaggaggaggaggaaccgatggagcacgaggagcccgctccggcgata
caggaggaaactgttgacaccgtttcccaggaggagttgacaagagcagaggagacgcag
tcctctcaaccagagccagccgaggaaccgatggaggagtctcggcctgaaccctcagac
ctccagcagcctgtgaacgaggctgaagccgacgccgcagaagcggaggctggaagcggc
aacgaggatgtagaatga
DBGET
integrated database retrieval system
