Clinocottus analis (woolly sculpin): 137783445
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Entry
137783445 CDS
T10471
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137783445 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137783445 (mtrex)
03041 Spliceosome [BR:
cana03041
]
137783445 (mtrex)
03009 Ribosome biogenesis [BR:
cana03009
]
137783445 (mtrex)
03016 Transfer RNA biogenesis [BR:
cana03016
]
137783445 (mtrex)
Enzymes [BR:
cana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137783445 (mtrex)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137783445 (mtrex)
Spliceosome [BR:
cana03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137783445 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
137783445 (mtrex)
Ribosome biogenesis [BR:
cana03009
]
Eukaryotic type
Pre-60S particles
Helicases
137783445 (mtrex)
Transfer RNA biogenesis [BR:
cana03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137783445 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
137783445
NCBI-ProteinID:
XP_068429477
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MADAFGDGLFNVFDDEQQTTDSKKIHPSLTTEIGKENKNGTDKDAAPAASLKREADSDGG
EEMVFGKKARNETVSEENLAEVMPQVKVEQVESVEGCSHEVALPANDKYKPLKSRVGKAA
KEYPFVLDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDE
IHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWITHLHKQPCHVVYTEFRP
TPLQHYIFPAGGDGLHLVVDENGDFRDDNFNTAMQVLRDAGDTGGSGGAKWDPRGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVFNNAV
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPSVG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPDVVEKMKTY
EEQYHRIEIPNEESVFTYYKIRQQLAKLGNDIQEFIHKPKYCLPFLQPGRLVKVKKEDAD
FGWGVVVNFSKKSNVKTCTDSEPLYVVEVLVHCSKDSVKDSATEASKPAAAGETGEMQVV
PVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPVDDMGIKDVG
LKKVIQKVEAFEHRMYSHPMHSDPNLEAAYSLCEKKALIAANVRTAKRELKKARTVLQMD
KLKCRKRVLRRLGFAGPSDVIEMKGRVACEISSADELLLTEMVFTGLFNELTVEQATALL
SCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLMDV
VFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGITK
IKRDIVFAASLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcttttggagacggtttgttcaacgtgtttgacgatgaacaacaaactacc
gacagtaaaaagatacacccttctctgacaacagaaatcgggaaagaaaataaaaatggc
accgacaaggatgctgctccggctgcctcgctcaagagggaggccgacagcgatggtgga
gaggagatggtgtttgggaagaaagcccgaaacgagacggtgtctgaagagaatcttgca
gaggttatgccccaagtgaaggtggagcaagttgaatctgtggaaggatgctcacacgag
gtcgctcttcctgccaatgataagtacaaaccgctgaaatccagagtgggcaaagcagcc
aaggagtacccgtttgttcttgacccgttccagcgtgaagccatcttgtgtatcgacaac
aacgagtcggtgcttgtgtcggcgcacacgtctgctggcaagacggtctgtgcggaatac
gccattgcactggccctcagagagaaacagagagtgatcttcaccagccccattaaagcc
ctctccaaccagaagtacagagagatgtacgaagagttccaggatgtgggactgatgacc
ggtgacgtcaccatcaaccccaccgcctcctgcctcgtcatgaccacagagatcctgagg
agcatgctttaccgaggctctgagatcatgagggaggtggcgtgggtcgtgtttgacgag
atccattacatgagagatgcagagcgcggtgtggtttgggaggagaccatcattctgctt
cctgacaacgtgcactacgtcttcctgtcggccaccatccccaatgcccggcagtttgca
gagtggatcactcacctgcacaaacagccctgccatgtcgtctacacagagttccgtccc
actccgctgcaacactacatctttccagcagggggcgacgggctccacctggtggtggac
gagaacggagacttcagagacgacaatttcaacaccgctatgcaggtgctgagagacgca
ggagacaccggcggcagcgggggggccaagtgggacccgagaggccgcaaaggaggcact
aaaggcccgtccaatgtgttcaagatagtgaagatgatcatggagagaaacttccagccc
gttatcatcttcagcttcagcaagaaggaatgcgaggcctacgcgctgcaggtggccaag
ctggacttcaacagagatgacgagaaacgtctggtggaggaagttttcaacaacgcagtg
gactgtctctctgacgaagacaagaaactccctcaggtggagcatgtgctgccgctgctg
aagaggggcataggaatccatcatggaggcctgctgcccatcctgaaagagaccatagag
atccttttctctgagggcctgatcaaggccctgttcgccacggagacgttcgccatgggc
atcaacatgccggctcgcactgtgctcttcaccagcgctcgcaagtttgatggcaagaac
caccgctttattacatccggcgagtacatccagatgtccgggcgagccggcaggagagga
atggacgacagaggaatcgttatcttcatggtggacgagaagatgagcccgtcggtgggc
aagcagctgctcaagggctcagcggaccctctgaacagtgccttccacctgacctacaac
atggtgctcaacctgctgcgcgtggaggagatcaaccccgagtacatgctggagaagtcg
ttctaccagttccaacactacagggctctgcctgacgtggtggagaaaatgaagacgtac
gaggagcagtaccaccgcatcgaaatccccaacgaagagagcgtgttcacttactacaaa
atccgacagcagctggccaagctgggcaacgacatccaagagttcatccacaaacccaag
tactgcctccccttcctgcagccgggccggctcgtcaaggtgaaaaaggaagacgcagac
tttggctggggggtcgtggtcaacttcagcaagaagtccaatgtgaagacctgcaccgac
tcggagccgctgtacgtggtggaggttctggtccactgcagcaaggacagcgtcaaagat
tctgcgaccgaggcgtcaaaacctgctgctgcaggcgagaccggagagatgcaggtggtc
ccggtgatgctgcatctgctgacttccatcagctcggttcgcctctacatccccaaagac
ctgcggccctttgacaaccggcagctcatgctgaagtccatccaggaggtgcagaagcgt
ttcccggacggcgtgccgctgctcgaccccgtggacgacatgggcatcaaagacgtcggc
ctgaagaaagtcattcagaaagtagaggccttcgagcaccgcatgtactcgcaccccatg
cacagcgaccccaacctggaggctgcgtactccctctgtgagaagaaagctctgattgca
gcaaacgttcggacggccaagcgggagctgaagaaggcgcgcaccgtgctgcagatggac
aagctgaagtgcaggaagagagtcctgcgacgcctcggcttcgccggcccgtcagacgtc
atcgagatgaaggggagggtcgcctgtgagatcagcagcgctgacgagctcctgctgacg
gagatggtgttcaccggcctgttcaacgagctgacggtggaacaagccacggccctgctg
tcctgcttcgtgttccaggagaatgccagtgagatgccaaagctgaccgaacaactcgcc
gctcccttgagacaaatgcaggaatgtgcgaaacgcatcgccaaagtatccgcggacgcc
aagctggaggtggacgaggagacctacctgaaccagttcaagccgcacctcatggacgtg
gtgttcgcctgggccaacggagccaccttcgctcagatctgcaagatgacggacgtcttc
gaagggagcatcatccgctgcatgcgccgcctggaggaagtcctgaggcagatgtgctcc
gcggccaaagccatcggcaacacggagctggagaacaagttcgctgaaggaataacgaag
atcaagagagacatcgtgtttgctgccagtctctacctgtga
DBGET
integrated database retrieval system
