Clinocottus analis (woolly sculpin): 137784086 Help Entry 137784086         CDS       T10471                                  Symbol col27a1a Name (RefSeq) collagen alpha-1(XXVII) chain A   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism cana  Clinocottus analis (woolly sculpin) Pathway cana04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cana00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     137784086 (col27a1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cana00536]     137784086 (col27a1a) Glycosaminoglycan binding proteins [BR:cana00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    137784086 (col27a1a) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Motif Other DBs NCBI-GeneID:  137784086 NCBI-ProteinID:  XP_068430620 LinkDB All DBs Position Unknown AA seq 1768 aa AA seqDB search MNLGTRRRDCRTSHLDTKRALLLCTVLYCTCYLGLTQVHSEDVDILQKLGLKGEKPSRSV PAGVIPFRSGIILNQRAHIETPLRSVIPPAVWPNLALVLSVRSHRVNSAFLFTLLSGRKK LLLGLQLAPGRLVLHAGPNTSVALPYEPHDGQWHQLAVGINGQRVTLYASCGEQSVHADF GWDSEEGAAPELQGSFLLGRTSHQQASAHFEGAICQFELVPSAQAAHNYCRYIKKQCREA DTYRPNLPPLLPILPREANVTATAAAPKRGGSETPRKPAGKSLARSVAAAASAVRHVAST QTMKLGPGTVPTPFVITSVPVTVQLGLASPPPKARTETVTAPLRTRVPPTKPPNPRPSTS KASTHKPSKPPAPKPTPHNSSKRATAGTDIKKKSTLPATSSTKPSKTKPDSALSEQGALP KKPQPTTSKKTTPRPKVTPSKATPSKPKTNSVKVLPSKPSISKVNPSKPPISKTTTAKTS KPVTKPVTKPVTKPTKQARTTKAPVTPRPSPYNAVTPPATDGFLSWELPPTQFSLLAGGI GQKGEAGPSGLPGPPGKPGLPGKRGPRGAAGPHGNPGRAGPPGLKGRKGDPGMSPGPAPK GEKGDSGILGPAGLTGQEGRKGQRGYAGPHGLPGEPGERGPVGSPGAKGYPGRQGLPGPI GPLGPKGVRGFIGIPGLFGLPGPDGERGVPGEPGKRGKMGRPGFPGDFGERGPPGPDGEP GELGAPGPNGVLGLIGDMGPLGEMGLPGPSGLKGVPGNPGEPGLKGDKGDVGIPGEQGEI GYSGDKGIQGAPGLPGPRGKPGPQGKLGERGPGGASGPLGPEGFPGDMGPPGENGLEGPK GKLGARGLPGPRGVPGLEGDEGPIGPPGPTGLEGRMGRKGFPGKAGPEGVKGESGVTGKV GTMGERGLVGFIGPVGEAGLAGEKGDRGKMGPPGPPGEKGTTGHPGTPGDSGPAGPPGRP GSSGAAGPAGSRGTKGLRGAIGPDGPTGETGLEGKTGADGPPGKIGFPGPQGKIGEFGET GPKGFPGIQGPSGPPGDKGIAGEPGSSGPPGTVGLLGEVGQKGPPGKVGEPGLPGEPGEK GAAGPAGNAGEQGLTGPRGEPGLEGEAGPAGPDGSKGEKGDVGQEGDNGEKGETGLKGKE GPPGHPGLNGVRGPEGKPGKFGERGKQGSKGAKGHQGHLGETGTVGKTGPPGFMGQKGSR GTVGHVGSPGRMGPQGEPGIAGYEGHQGPQGPMGSPGPKGEKGEHGEDGKVEGPPGPPGD TGSPGDRGERGESGDPGYKGQVGLDGQRGRAGAPGQPGTPGAHGQQGPKGAKGDQGQKGK KGQSGQKGTKGLEGGAGLSGPRGVVGREGLEGVSGTDGVPGKDGRGGRQGEHGEDGEPGL PGKVGSRGKTGGPGLPGDQGTFGPKGERGLRGQSGPSGKRGFRGGMGLPGTQGEQGPKGQ PGDTGLPGFPGILGVFGPRGPPGDFGPKGVRGPKGPQGAMGRGGGVGPAGIIGPHGSVGP RGEKGNHGETGFQGPRGSPGPRGLPGPPGRPGIPLSFMEDGVLFMDSHPPLRAENKLVMD LPMLDQGTEIFKTLHYLSNLIQSLKNPLGNRDNPARICRDLHSCEQKLNDGTYWMDPNLG CSSDTIEVSCNFTGGGQTCLKPITVSKPTLSVGRVQMNFLHLLSSEAEQHIIIHCLNFSV WRSAEGQQAAHSSVRFKAWSGEVLEAGGDLEPDVIEDSCWVKDGRWHQTHFVFHFLDPSL LPVVDVYNLPKTTPGSHYHLEVGPVCFL NT seq 5307 nt NT seq  +upstreamnt  +downstreamnt atgaatttaggcacccgaaggagagattgcagaacctctcatctagacacaaagagagcc ctattgctctgtaccgtattatattgtacttgttacctgggacttacacaagtacactct gaagatgtggacatcctccaaaagttggggctcaagggagagaaaccgtcgcgctcggtg cctgcaggggtcattccattcaggtcgggcatcatcctcaaccagcgggcgcacattgaa accccgctgcgctcggtcatcccgccggccgtctggcccaacctggcactggtgctgagt gtgcgctcgcaccgggtcaacagcgctttcctcttcacgttgctctcgggccgcaagaag ctccttctgggcctgcagctggcgccgggccgcctggtcctccacgcgggacccaacacc tcggtggcactgccctacgagccccacgatggccagtggcaccagctggcggtgggaatt aacggacagagagtgactctttatgcctcctgcggagagcagagtgtccatgcagacttt gggtgggacagcgaggagggagcggctccggagctccagggctccttcctgttggggagg acgagccatcagcaggcctcggcgcactttgaaggagccatctgccaattcgagctggtc ccttctgcacaggcggctcacaactactgcaggtacattaagaaacagtgcagggaagcc gacacgtacaggcccaaccttcctcccttgctgcccatcctaccgcgagaagcaaacgtc acagctaccgccgccgccccgaaacgcggcggctcggagacgcccaggaagcccgcgggg aagagcctcgccaggagcgtcgccgccgccgcctcggcagtcaggcatgtggcctccacc caaacgatgaagctcggccccgggaccgttcctacaccctttgtgatcacctccgtgccc gtcacggtccagctcggtttggcctccccgccacccaaggccaggaccgagaccgtcaca gcaccactcaggacaagagtaccgccgaccaaacccccgaacccaagacccagcacctct aaagcttcgactcacaaaccctccaagcccccggccccaaagcccactcctcacaacagc tccaaaagggcaacagcaggaacagacatcaagaagaagtctactcttccagccactagc agcaccaaaccctccaagacgaagcccgactccgccttatcagaacaaggtgcactcccg aagaaaccacaacccaccacgtccaagaaaacaacgcccaggccgaaagttacgccatcc aaagccactccgtccaaacccaaaactaattctgtcaaagttctcccttccaaaccatcg atatccaaagtcaacccttcaaaaccaccgatctctaaaacgacgacggctaaaacctcc aagccggtcaccaagccggtcaccaagccggtcaccaagccaacgaagcaagccagaacc accaaggctccagtcaccccgcgaccgtctccatacaacgccgtgacgccgccggctacc gacggcttcctgagctgggagctgccgccgacccagttctccctgctggctggaggtatc ggacagaaaggagaagccggcccgtcgggactgccgggacctccagggaagccgggtctg ccgggcaagaggggtcctcggggcgccgctggtcctcatggaaaccccggccgagctggt ccacccgggctcaaggggagaaaaggagaccctggcatgtcacctgggccagcacctaaa ggagagaagggcgactcggggatcctgggcccggcgggactgacaggccaagagggtcgg aagggacagagaggttacgccgggccacacggcctccctggagagcctggagagcgaggt ccagttgggagcccaggtgccaaaggttatcctggcaggcagggtttgccggggccgata ggaccgttggggcctaaaggcgttcggggtttcattggcatcccggggctttttggcctt cccgggcctgatggcgaaagaggcgttcccggcgaaccagggaagaggggcaagatgggt aggccggggtttccaggggactttggggagagaggaccacctggaccagatggagagcca ggcgagctgggagcccccggtccaaacggagttcttggactgattggtgacatggggcct ctgggagagatgggccttccaggaccgagcggactgaagggtgtgcccggaaatccagga gaaccaggactgaaaggtgataagggcgacgtcgggattcccggagagcaaggggagatc gggtacagcggagacaagggcatccagggggctccagggctgccaggccctcgtgggaaa cccggaccacagggcaaattaggagagcgaggccccggcggcgcttctggcccgctcggc cctgagggcttcccaggtgacatgggacctccgggagagaacggcctggaaggaccaaag ggaaagctcggggccagagggctgccgggcccgcgaggggttccaggcctggagggagac gagggcccgatcggaccgccgggcccgacaggactggagggtagaatgggaaggaaaggt tttcctgggaaggccgggccagagggagtcaagggagaatccggtgtcacaggaaaagtt ggaaccatgggagaaagaggtttggtgggcttcatcgggccggtgggagaggcgggactg gcaggagagaagggcgatcgagggaagatgggccctccgggaccgccgggagaaaaggga acaacgggtcacccagggacgccgggcgactcggggcctgcaggacctccaggacgacca ggctcttctggagcggcggggccggccggcagcagaggaaccaaaggcttacggggagcg atcgggcccgacggtccgaccggagagacggggttagagggcaagacgggcgccgatggt cctccaggaaagatcggtttccctggacctcaggggaagatcggggagttcggggaaacc gggccgaaaggttttcctggcatccaagggccctccgggcctccaggggacaagggaata gcaggagaaccgggatcctctgggccgccggggacggtgggactgttaggagaggtcggt caaaagggtcctccgggtaaggtgggggaaccgggcctgccaggagagccaggagagaag ggagccgccggacccgccgggaacgccggagagcagggactcaccggcccgcggggagag ccaggcctggaaggagaagccggtccagctggtcccgatggaagcaagggggaaaaaggc gacgtgggtcaggagggcgacaacggggagaaaggtgaaaccgggctgaagggaaaagaa ggcccgccgggacatcctggactcaacggggtcagaggcccagaagggaaaccgggcaaa tttggggaaagaggcaaacaagggtcaaagggggccaaaggtcatcaaggtcacctcggg gagaccggcacggtggggaagaccggcccgccggggttcatggggcagaagggctccaga ggaaccgtcggacacgtgggttctccgggtcggatgggtccgcagggggaaccggggata gccgggtatgagggccatcagggacctcagggccccatggggtctccaggaccaaaaggt gaaaagggcgagcacggcgaggatgggaaggtggagggtcctcctggtcctccaggtgac acaggctctccaggcgacagaggagagagaggagagtcaggagatccggggtataaaggt caggtggggctagacggacagcgaggccgggccggagctcccggacaacctggaacgccc ggagcccacgggcaacaaggacccaaaggggccaaaggagaccaaggtcaaaaaggcaaa aagggtcagtcaggacagaaaggaaccaaaggactggagggcggggccggcctctccggg cccagaggcgtggtggggcgagaggggctggagggcgtctccgggacggacggagtccca gggaaggacggccgaggaggccggcagggagagcatggcgaggatggagagcctggtctt cctggcaaagtgggctcacgtggtaaaactggcggtccaggactccctggagatcagggg acctttggaccaaagggcgagcggggtcttcgaggtcagagcggaccttcggggaaacga ggcttcagaggtggaatggggctgccggggacgcagggagagcaaggccccaaaggacaa cctggggatacagggctgccaggtttccctgggattttgggagttttcggaccgcggggg cctccaggagacttcgggccgaagggcgttcgggggccgaaggggccgcagggcgccatg ggccgaggaggaggggtcggccccgcggggatcatcggcccccatggcagcgtgggtccg agaggagagaagggaaaccacggagagaccggatttcaaggcccgaggggctctcctgga cctcgtggacttcctggacctccaggtcgcccgggtatcccgctgtcgtttatggaagat ggtgttttgttcatggattcacacccccccctcagggctgagaataagctagtgatggac ctgccgatgctggaccagggcacagagatctttaagaccctccactacctcagcaacctg atccagagcctgaagaacccgctgggcaaccgggacaaccccgcccgcatctgcagggac ctgcacagctgtgaacagaagttaaacgatggcacttattggatggaccccaacctgggc tgctcctcagataccatcgaagtctcctgcaactttactggaggtggccagacttgcctg aaaccaataactgtctccaagccgactctcagcgtcggtcgtgtccagatgaacttcttg cacctgctgagctcagaggcggagcagcacatcatcatccactgcctgaacttctcggtc tggaggtcagcggagggtcagcaggccgctcacagctccgtgagattcaaagcctggagc ggggaggtgttggaggcgggaggagacctcgagccagacgtcatagaggattcctgctgg gtgaaagatggccgctggcaccaaacccattttgtgttccacttcctggacccctctctc ctccccgtggttgacgtctacaacctccccaagactacgcccggctcacattaccacctc gaagtaggtcctgtttgcttcctgtga

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