Clinocottus analis (woolly sculpin): 137784496
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Entry
137784496 CDS
T10471
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b
KO
K13126
polyadenylate-binding protein
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03015
mRNA surveillance pathway
cana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137784496 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
137784496 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137784496 (pabpc1b)
03041 Spliceosome [BR:
cana03041
]
137784496 (pabpc1b)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137784496 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
137784496 (pabpc1b)
Spliceosome [BR:
cana03041
]
Complex C
Other components
Complex C specific factors
137784496 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_10
RRM_7
RBD_RDR6
RRM_occluded
RRM_3
YflT
HTH_58
Motif
Other DBs
NCBI-GeneID:
137784496
NCBI-ProteinID:
XP_068431317
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYVKNFGEDMDEEKLREVFSKYGNSMSIRVMSDDSGKSRGFGFVSFER
HEDAQKAVDELNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFTPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYQAAGQMAQLRPSPRWATQGVRPQHFQNMPGAMRPSAPRPQTFGAMRPASQVPRMMSA
QRLAQPMGPRPTSAAAAAPVRGVPQYKYATGVRNPQQHIPAQPQVPMQQPAVHVQGQEPL
TASMLAAAQPQEQKQMLGERLFPLIQNMHPSLTGKITGMLLEIDNSELLHMLESPESLRS
KVDEAVAVLQAHQAKETSQKTVTNSAGVPSV
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctagtgctcccagttaccccatggcttccctgtacgtgggggatctgcatcaa
gatgtgaccgaggccatgctgtacgagaaattcagcccagccggagctatcctatcgatc
cgggtctgtagggacatgattacccggcgttcccttgggtacgcttatgtcaacttccaa
cagccagcggacgccgagcgtgcactggacaccatgaactttgatgtgatcaaggggcgg
cctctgcgcatcatgtggtcgcagcgtgatccatcactgagaaagagcggtgtgggaaac
atcttcattaagaatcttgacaaatccatcgacaacaaagctctatacgacaccttctct
gcatttggcaacatcctgtcttgcaaggtggtttgtgacgagaatggctctaaaggctac
ggctttgtgcattttgagactcaggaggcagccgagcgagccattgaaaaaatgaatggc
atgctgctcaatgaccgaaaagtattcgtgggtcgcttcaaatctcgtaaagagcgcgag
gctgagctgggtgcccgcgccaaagagttcacgaatgtctatgtcaaaaactttggtgaa
gacatggatgaagagaagctgagggaagtcttcagtaaatatggaaactcaatgagtatc
cgtgtgatgtcagatgacagtggaaagtctcgaggcttcgggtttgtcagctttgaaagg
cacgaggatgcccagaaggcagtcgatgagctcaacgggaaggagttaaacggcaagctc
atctatgttggccgtgcccagaagaaggtggagcgacagacggaactcaagcgcaaattt
gagcaaatgaaacaagaccgcatgactcgctaccagggtgtcaacttgtatgtgaagaac
cttgatgatgggattgatgatgaacgtctgcgaaaggagttcacaccattcggcaccata
accagtgccaaggtcatgatggaagggggtcgcagcaaaggttttggttttgtctgcttc
tcgtccccagaggaggccacaaaggcggtgacggaaatgaatggacgcatcgtagcaacc
aagccattgtatgtggctctggcccagcggaaagaggagcgtcaagcccacctcaccaac
cagtacatgcagcgcatggccactgtgcgtgcagtgccaaacccagtcatcaatccctac
caaccagccccgccctcaggctacttcatggcagccatacctcaggcccagaaccgtgct
gcttactaccaagctgctgggcagatggcccagcttcgcccgagcccacgctgggctacc
caaggtgtccggccacaacacttccagaacatgccaggtgctatgcgtccctcagcacca
cgccctcagaccttcggcgccatgcggccggcctcccaggtgccccgaatgatgtccgcc
cagcgtctcgctcagcccatgggcccccgaccaacctccgcagctgctgctgctcctgtg
cgtggagtccctcagtacaaatacgccacaggagtccgcaatccccagcagcacatacct
gctcagccacaagtccccatgcaacagcccgctgtccatgttcagggacaggagcctctg
acagcctccatgctggcagccgctcaaccacaggaacagaagcagatgctgggtgaacgt
cttttcccactgatccagaacatgcacccaagcctaacagggaagatcactggtatgttg
ctggaaattgacaactcagagctgctccacatgctggagtccccagagtctctccgctcg
aaggtggatgaggcggtggctgtgcttcaagcccaccaggcaaaggagacctcccagaag
actgtgacaaattcagctggtgtcccgagtgtctga
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