Clinocottus analis (woolly sculpin): 137786377
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Entry
137786377 CDS
T10471
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic isoform X1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana00260
Glycine, serine and threonine metabolism
cana00630
Glyoxylate and dicarboxylate metabolism
cana00670
One carbon pool by folate
cana01100
Metabolic pathways
cana01200
Carbon metabolism
cana01230
Biosynthesis of amino acids
cana01240
Biosynthesis of cofactors
cana04981
Folate transport and metabolism
Module
cana_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
137786377 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
137786377 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
137786377 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
137786377 (shmt1)
Enzymes [BR:
cana01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
137786377 (shmt1)
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Paralog
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Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
137786377
NCBI-ProteinID:
XP_068434325
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All DBs
Position
Unknown
AA seq
522 aa
AA seq
DB search
MTRRTGSAFCILLFSCSVGLLFGSDTEFPLCVTRNEETMSISNGHNVAVSKEMWDSHNKM
LLEPLAVNDSEVFSIIKKEKRRQTYGLELIASENFASRAVLEALGSCMNNKYSEGYPGQR
YYGGTEHVDELERLCQKRALETYGLDSEQWAVNVQPYSGSPANFAVYTAVVEPHGRIMGL
DLPDGGHLTHGFMTEKKKISATSIFFESMPYKVNPETGYIDYDRLQENARLFHPRLIIAG
TSCYSRNLDYGRLKQVANENGAYLMGDMAHISGLVAAGVVPSPFEYCDIVTTTTHKTLRG
CRAGLIFCRKGVRSVDAKGKETLYNLESLINQAVFPGLQGGPHNHAIAGVAVALKQAMTP
EFKAYQMQVLENCKSLSNALIDHGYKIVTGGSDNHLILLDLRSKGTDGGRAEKVLEACAI
ACNKNTCPGDKSALRPSGLRFGSPALTSRGMVEDDFKKVAEFIHRGIELTLEVQRSLDPK
ATLKEFVQALAKGEKFQQRVSEIRAEVESFSGQFPMPGLPEL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacacgaagaaccggctcagctttttgcattttactcttttcatgctcggttggtttg
ctcttcggcagcgacaccgaatttccactttgtgtgaccagaaacgaagaaaccatgtct
atatcaaatggacacaatgttgctgtgagcaaagaaatgtgggattcacacaacaagatg
ctgctggagcctctggccgtcaacgactctgaggtgttctccatcataaaaaaagagaag
cgcaggcagacgtacggtctggagctgatagcgtcagaaaactttgccagcagagccgtc
ctcgaggcgctgggttcctgcatgaacaacaaatactctgagggatatcccggtcagagg
tactacggtggtacggagcatgtcgacgagctggagaggctctgtcagaagagggcacta
gagacctatggtctggactctgagcaatgggccgtcaacgtgcagccatactcgggttca
cctgctaacttcgccgtctacacggccgtggtggagccccacggcaggatcatgggcctg
gaccttcctgacggaggtcacctgacacacggcttcatgactgagaagaagaaaatctcc
gccacatccatcttctttgagtccatgccgtataaggtgaatccagaaactggctacatt
gactatgaccgactgcaagaaaacgctcggctgttccaccccagactcatcattgcagga
acgagctgctattcccgcaaccttgactacggccgcctgaagcaggtcgccaatgagaac
ggtgcatacttgatgggggacatggctcacatcagcgggctggtggctgctggagtggtg
ccctcaccctttgagtactgtgacattgttaccacgacaacacacaagacgctgcgtggc
tgccgcgccggactcatcttctgcaggaaaggcgtgcggagcgtcgacgccaaggggaag
gagactctgtacaacttggagtccttgatcaatcaggctgtgtttccagggctgcaggga
ggaccacacaaccacgctattgcaggtgttgccgttgctctcaagcaagccatgacgcca
gagttcaaggcctaccagatgcaggttcttgagaactgcaaatctctctccaatgcgctg
atcgaccacggctacaagattgtcactggcggctctgacaaccatctgatcttgctcgac
cttcgcagcaaagggaccgatggaggacgagctgagaaggttttggaggcctgtgccatt
gcttgtaataaaaacacctgtccaggggataagagcgctctgcgccccagtggtctgagg
tttggctctccagctctgacctccagaggcatggtggaggatgatttcaagaaggtggcc
gagttcattcacagaggtattgagctgaccttggaggtgcagagaagcctggatcccaag
gccactctgaaggagtttgttcaggcgctcgccaagggagagaagttccagcagcgggtc
tcagaaatcagggccgaggtggagagtttctccgggcagttccccatgccgggcctacct
gagctgtag
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