Clinocottus analis (woolly sculpin): 137786528
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Entry
137786528 CDS
T10471
Symbol
col5a3a
Name
(RefSeq) collagen, type V, alpha 3a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
137786528 (col5a3a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cana00536
]
137786528 (col5a3a)
Glycosaminoglycan binding proteins [BR:
cana00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137786528 (col5a3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
137786528
NCBI-ProteinID:
XP_068434553
LinkDB
All DBs
Position
Unknown
AA seq
1812 aa
AA seq
DB search
MEGVSLEAGLCTSRTGFEEPDRAYKIDKKIQLSAPTRQLFPDSTIFPENFSMMATVRAKK
GSKFFLLSVYDKRGVQQLGFEVGRSSVFLYEDQHGQPTPELYPIFKKINLADGNWHRIAY
SVQDKSVTLYLDCQWKQTLDLLRGDNAVVSTEGVTVFGTRLLDKDAFEGDIQQLLIQEDP
QAAADYCVNYIPDCDSALPYNGKSPVLQEDSQHRSDFLTQSDHLDEPKEQSKKDGKGKKK
RDKSSKGKGKGKGKRKGKGKGKGKKGSRKRKHQEEGLEDGFLRVSTAVPEYLSQEPFQPT
DLLEIKSTPETVIPTKVLDETLLEMATHEPDSTVEAPTVVPSAMPEPKVTEEEDKPVKTP
VIEEHGDDLYGDLYDDPSVSTVTGGPNVTDYEILEYEDYKNDTEAEYEEYEVYADGFGFA
ERERAETWDGEVNPRAEKGQKGEAAIIEPGTLVEGPPGLPGPQGPPGRPGLAGVDGIPGP
PGTLLMLPFQYGGDSQKGPVVSSQEAQAQAILQQTQLSLKGPPGPLGLTGRSGPLGVPGN
TGFKGDSGESGPPGPPGLQGLQGINGKPGKRGRAGMDGGRGAPGETGSKGDRGFDGLPGL
PGDKGHRGDRGKQGPHGPDGEPGEKGSDGPLGPRGQPGEPGSRGLVGPRGPPGPPGQPGI
RGTDGVQGSKGNLGPSGETGPSGQQGNPGAQGLSGPQGPIGLPGEKGPQGKQGMLGLPGI
DGPTGHPGREGPAGEKGIQGLPGAQGPFGYPGPRGVKGGDGVRGLKGSTGEKGEDGFPGF
KGDMGIKGDRGDNGASGARGEDGPEGPKGQIGPMGDSGTLGIAGEKGKLGVPGLPGYPGR
RGSKGTLGFPGGNGVSGEKGRRGPSGQSGAGGQRGANGARGGRGANGPTGKPGEKGSAGQ
DGSPGSPGEQGPHGPQGRNGESGPRGPNGPPGKDGLPGHPGQRGEPGFQGKNGSPGPSGV
VGPQGKSGETGPTGDRGHPGSPGPPGEHGLPGSAGKEGAKGDPGPPGASGKSGPAGLQGF
RGSRGTHGAMGPAGLKGGEGLPGVAGLIGATGERGPAGPAGAIGQPGRAGGVGPAGPTGE
KGEPGEKGPVGPAGHDGELGPSGLPGAAGSPGPPGEDGDKGETGAPGQKGSKGDKGEFGP
SGPVGSQGPVGQPGLPGADGEPGPRGQQGMNGAKGDEGFRGFMGASGPTGLQGMPGPPGD
KGDSGHVGSMGPPGQHGPRGPQGSAGGEGLPGMAGGVGQHGIVGEKGEDGEAGNPGSVGE
PGTAGTAGDVGEKGESGPSGAAGPAGPRGTPGEDGPKGNLGPIGFPGDSGPPGEAGDNGV
DGGPGPKGDNGESGKAGSPGASGEPGPSGPPGRRGHIGAVGKEGKQGMKGAKGTMGAEGP
VGKTGPVGPQGHPGRSGPEGLRGIPGSAGEQGLNGPPGLTGPPGPIGPPGLPGLKGDPGY
KGDKGHGGLIGLIGPPGEFGEKGDRGLPGIQGAHGPKGDEGTHGTPGPTGPLGPPGLSGS
PGQKGSKGEIGTVGPRGDRGPAGPPGPPGPPASMIEPLPIREGRRKRHRHSDGAGGAAPF
REEEVDLEFLQGDQPLEDPEGMEEVFAILSSMKTEVEVMRRPLGSFESPARTCKELMMVQ
PDYKDGDYWIDPNQGCHRDSIKVYCNFTADGETCLYPDKRIENVKLAAWNKEKPGSWYSQ
YRKGKQFSYSDRDENPVHVVQLTFLKLLSATARQSFTYTCQNSAGWFDSTSRSYQRALRF
RGSNDEEVTQAKSPFIKAVHDGCQFRKGQERTELEIDSPSAELLPIIDMAPADFGSSNQK
FGFQVGRVCFNG
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggagggggtgtccttggaggctggtctctgcaccagcaggacaggctttgaggagccg
gaccgggcctacaagatagacaaaaagattcagctcagtgcgccaacacgacaacttttc
cctgattcaaccatatttcctgagaatttctccatgatggcgacagtgcgagctaaaaag
ggctccaagttcttcttactttcagtgtatgataaacggggcgttcagcagctgggcttc
gaagtgggccgttcatccgtcttcctctatgaggaccaacatggacagcccacaccagaa
ctgtatcccatcttcaaaaagatcaacctggctgatggaaattggcacaggatagcctac
agtgtgcaggacaagtctgtgaccctctacctggactgtcagtggaaacagaccctggat
ctgctgcgaggggacaacgctgtagtcagcacagagggtgtcacagtgtttgggacacgg
ctgctggacaaagatgcatttgagggagatattcagcaactactgattcaggaggacccg
caggctgctgctgactactgtgtaaactacataccagactgtgactctgctttgccctac
aacggcaaatccccggtcctgcaggaggactcccaacacaggtctgatttcctgacacaa
agtgaccacctggatgagccaaaggagcaatctaaaaaggacggcaaaggcaaaaagaag
cgggacaagagctctaaaggcaaaggcaaaggcaaaggcaaacgcaaaggcaagggcaag
ggcaagggcaagaagggatccagaaagagaaaacatcaagaggaaggtctcgaggatggc
ttcctcagagtgtccactgcagtccctgagtatctatcccaagaaccttttcagccaaca
gatttgctagaaattaagagcacaccggaaacggtcatccccactaaagtgctcgacgag
accctactggagatggcaacacatgaaccagactctacagttgaggcccccactgtggtg
cccagcgctatgcctgaaccaaaggttactgaggaggaggacaagccggtgaagacgcca
gttatagaggagcatggcgatgacctttatggagacctctatgatgatccttcagtttcc
acggtaacaggaggaccgaatgttactgattatgagattcttgaatatgaagattacaag
aatgacacagaggcagagtatgaggagtacgaggtgtatgcagacggctttggatttgca
gagcgggaaagagcagagacgtgggatggagaggttaacccccgagcagagaagggccag
aagggagaggcagctattattgagccgggtacattagtggaaggaccgccaggtctaccg
gggccacagggtcccccaggacgtcctggtcttgctggggtcgatgggattccaggtcct
ccaggaaccttgttgatgctaccattccagtatggaggtgattcccagaagggaccagtg
gtgtcttcccaggaggcacaagcacaggctatactgcaacagacccagctgtcattgaag
ggacccccaggcccactgggtctaacagggcgatcaggcccactgggagtaccaggtaac
actgggttcaaaggggacagtggagaaagtggccctcctgggccacctgggttgcaaggc
cttcaaggaattaatggaaagccaggaaagagaggccgtgcgggaatggacggcggtcgt
ggagctccaggagaaacaggatcgaagggcgacaggggttttgacggcctgccaggtctc
ccaggagacaagggacacagaggggacagagggaagcagggtcctcatgggcctgatgga
gagccaggagaaaagggatctgatggacctttggggccaagagggcaaccaggcgaacct
ggttctcggggtcttgttgggccaagggggccacctggcccacctggtcagccgggtatt
cgaggaactgatggagtacaagggtcaaagggcaacctgggtccctctggagagactggg
ccctccggacaacagggaaatccaggagcccagggcttgtctggtccacagggtcccatt
ggattgccaggagagaagggcccccaggggaagcaaggcatgctgggtctaccaggaatt
gatggcccaaccggtcatccaggaagagagggccccgcgggagagaaaggcatccaaggc
ttaccaggcgctcaggggcccttcgggtacccaggaccccgtggagtcaagggaggagat
ggagttcgaggtctaaagggaagcacaggagagaagggggaagatggcttccccgggttt
aaaggtgatatgggcatcaagggagacaggggtgataacggagcttctggtgctcgtgga
gaggatggaccagaggggccaaagggccaaataggacccatgggagattcaggaactctt
gggatagctggcgagaagggtaaactaggtgtgcctggattgccaggatatcctggaaga
cgaggttctaagggaacacttggcttccctggtgggaacggggtctcaggagagaaagga
cgaaggggtccatctggccagtcaggggccggaggccaaagaggtgctaatggagcccgg
ggaggaagaggagcaaatgggcccactggaaagcctggagaaaagggttctgctggacaa
gacggttctccaggttcccccggggaacagggcccccatggaccacagggacggaacggt
gaatcaggacctagagggcccaatggtccacccggaaaagatggattgccgggtcatccg
ggccagagaggggaaccaggattccaaggcaaaaatggttcccccggcccctcgggtgtt
gttggaccacagggcaaatctggtgagacgggaccaactggagacagaggccatcccgga
tcaccaggaccaccgggcgagcatggtttaccggggtctgccggaaaggagggtgccaaa
ggagacccaggtccaccaggagcctcagggaaaagtggccctgctgggctgcaaggcttc
agagggagccgagggacccatggtgcaatgggtcctgcaggtctgaagggaggagagggc
ctacctggtgtcgcgggacttatcggtgccactggagagaggggccctgctgggccggca
ggcgctattggccagccaggacgggccggcggcgtgggccctgctgggccgacgggagag
aaaggcgagccaggagagaaggggcctgtggggcctgctgggcatgatggggaactggga
ccgtcagggctgccaggggctgcgggatctcctgggcctccaggagaggatggagacaag
ggagagacaggagcaccaggccagaagggcagtaaaggagacaaaggagagtttgggccc
tcaggaccagttggaagtcaaggaccagtgggccaaccaggactgccaggtgcagatggt
gagccgggtcctcgaggccagcagggcatgaacggggcgaaaggagatgaaggattcaga
ggctttatgggagcatccggtccgactggactacaggggatgccgggacctccaggggat
aagggagacagcgggcatgttggctccatggggcctccaggacagcatggcccacgaggc
cctcaggggtccgctggtggagagggcctacctggaatggctggtggagttggtcagcat
gggattgttggagaaaagggtgaggatggagaagctggaaaccctgggtccgttggagag
cccggcactgctggtactgcaggcgatgtgggggaaaagggtgaatctggcccttccggt
gcagccgggcctgcaggacccagaggaacaccaggggaggacggacccaaaggcaacctt
ggccctattggattccccggagattcaggacctcccggagaagctggcgacaatggagta
gatggtgggccgggacctaaaggagacaatggagaatctggcaaagcaggatctccagga
gcctctggagaaccaggtccttcaggacctcctggaaggaggggtcatataggtgctgtg
gggaaagaagggaagcaaggcatgaagggagccaaggggacaatgggagctgagggtcca
gtggggaagacaggcccagtgggaccccaaggacatcctggaaggtctggcccggaaggt
cttcgaggcatcccaggttcagcgggtgagcaagggttaaatgggccaccaggactaact
ggaccaccaggaccaatagggccaccaggacttccgggattaaaaggagaccctggatac
aagggagacaaaggtcatggtgggttgatcggtctaatcggccccccgggagaatttggc
gagaagggagacagaggccttcctgggattcagggtgcacacgggcctaaaggagatgag
ggtacacacggcacacctggtcccactggcccactgggaccacctggactgtcaggttca
cctggccagaagggatcgaagggagaaataggtactgtgggtcccagaggagatcgaggc
cccgctggacccccaggtcccccaggaccccccgcatcaatgattgagcctctgccaatc
agagagggcaggcggaagagacatcggcactcggatggggcaggaggagccgcaccattc
agggaggaggaggtggatctggagttcctccagggagatcagcctctggaggaccccgag
ggaatggaagaagtctttgctatcctgtcgtccatgaaaacagaagtagaggtgatgagg
aggcccttgggatcttttgagagccctgcccggacttgcaaagagctcatgatggtccaa
ccggactacaaagacggagactactggattgatcctaaccagggctgtcaccgagactcc
atcaaggtctactgtaacttcacagctgatggagagacatgtctctaccctgacaagagg
attgagaatgtgaaattagcagcgtggaacaaagagaagccaggaagctggtacagccaa
tacaggaaagggaagcagttctcctacagtgacagggatgagaaccctgtgcatgtagtt
cagctgaccttcctgaaactactgagtgccacggccaggcagagcttcacctacacctgc
cagaactcggcaggctggtttgacagcacctctcgttcctatcagcgtgccctccgcttt
cggggcagcaatgacgaggaggtgacacaagccaaaagccccttcatcaaagcagtgcat
gatggatgccagttccgcaaaggtcaggaaaggactgaactagagattgactctccctca
gcagagctgcttcccattatagatatggctccagcagactttggcagcagcaaccagaag
tttggattccaagttggacgagtatgcttcaacggttaa
DBGET
integrated database retrieval system
