Clinocottus analis (woolly sculpin): 137786835
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Entry
137786835 CDS
T10471
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cana Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cana01001
]
137786835 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cana04054
]
137786835 (ciita)
Enzymes [BR:
cana01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
137786835 (ciita)
Protein kinases [BR:
cana01001
]
Serine/threonine kinases: Other
TAF1 family
137786835 (ciita)
Pattern recognition receptors [BR:
cana04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
137786835 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
AAA_16
LRR_8
nSTAND3
M-inducer_phosp
nSTAND_NTPase5
AAA
NLRC4_HD2
NB-ARC
TsaE
Arf
Motif
Other DBs
NCBI-GeneID:
137786835
NCBI-ProteinID:
XP_068435050
LinkDB
All DBs
Position
Unknown
AA seq
1213 aa
AA seq
DB search
MQDLDQDPYISSNWGDLPEDLSEFLNDDFLVNFGVSYLDTDVLFDDPLLTCEDELSTCTA
LPTASELPDQESQREAQRDKTTNNRRKRPRVPRAQRCTDENTPSRSKRQRAAARPRTKVA
QTQSPVTQGADTEESEASSAETTGLSATPPRVVHVHPSSIQFITIPDTSAYQVVGTLRLS
HPVLRLPIPNTAAAPTYILVPAASPPFKQQEPPLSPMNGAVAPVQMSSPPLGSLSDTKAM
SPHWALPLSPNNEMSTCKESPLPQSPTALDIPQVVKDYIQKAKAHVSQPGQDTESGLGLS
SRYVDVQVSRREILRSGKNANKVLDKDLVITGDTDRQKSCLGHMQIFEGLNGDKPKCYIL
LLGNAGMGKTTLVRKLCLDWSMNCLPQFDFVFVLDGKALSLSAATHSLQTLLLDSSSFAA
PCADPEAVYAQILAAPKRVLVVFDGFDELRDFEILLQTQEKDSMTSLQKDSKARAYTVRQ
LYSAVLQRLLLPGCTLLLATRPRGAASQLLRRTDSLLEVCGFTPTNVETYISRYFTDPDV
GAAALNCLKNCSYLRLLCWNPGLCRLVCLVLERCKSFEDLPRTLTGLCHRVLRLKLEKDE
SQSEVQPEEEEQISGSSLEKRRQKNTRTKPGALVRTRTRSTKGSKKQEEDGGDVDGVGIK
SVGGEVDKADREMLSQLSCLAWKGVKANSSILPTEWAVSAELEAFGRRTGLISSYHPRPR
EVASSDETGGGGRPDREEMARRKIGEKRGKKGRTSTEHVDVSDDHILSWANPFLQSYLAA
VHLSLSRSVTDRAFLQTLPFQSGQKERRRPQREELELTQRFAVGLLFHDRTELPRLHSYT
EASFGDMVVAKQALATRHLEGLSHGDLSPAQVLEACHHVYEASFTRGAGSGGGGGERLVA
HLAANLPEALTFRGVPLKPSDVFAVQNVLEKGGAEGRRFSLDLEDSGIQISGLEALVGLN
NIHTYRACIADVIALWEQLEQNGQEVLLREAVSKFKIHPLKATQACHIEHLAKLVNIHTH
RRLPDSSSQSESILAEGVPAVKELHKLQLELGPEKSPQVLLKLWELLPGLHNLQHLDLEN
SKIGDKGAEQLADALSSLGSLEILNLPQNCIGDQGVKKLETALRNLPKLHCLSLYSNEIS
DEGAEILADVLPHMASLTDLDVKYNKLTDVGAQILGASLRNCKKMKTLRMWNQCIPYGVL
ERLQQQDSRIQWQ
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatttggatcaggacccgtatatctcttcaaactggggagatctaccagaggat
ttatctgagttcttgaatgacgatttcctggtgaactttggggtttcttacctggacaca
gacgtgctctttgatgacccgttgttgacttgtgaggatgaactcagcacctgcactgct
cttcccacggcgagcgagctgcccgaccaagagagccagcgggaggcgcagcgggacaag
acgaccaataacaggaggaaaagacccagagttccacgggcacaacggtgcactgacgag
aacacgccatcgcggtcaaaaagacagagagcagcagctcgaccaagaaccaaagtggca
cagactcaatcacctgtcactcaaggcgctgacacggaggagtcagaggcgagttcagca
gagacgacgggcctctccgccaccccaccaagagtcgttcatgtccatccctcctccatt
cagttcatcaccatcccggacacctcagcatatcaggttgttgggacgctgaggctctct
catccggttctcaggcttccgatcccaaatacagctgctgcacctacttatattttagtt
cccgcggcctcaccacccttcaaacagcaggagccgcctctctccccgatgaacggagca
gtagcgccggtccaaatgagttcccccccacttggatctctgtcagacaccaaagccatg
tctccccattgggccttacccctctcccccaacaatgagatgtccacatgtaaggaatcc
cctcttcctcagtctcccactgccctggatattccacaggttgtaaaggactacattcag
aaagccaaagcacacgtgagtcaacccggccaggacacggagtcgggcctcggtctgtct
tctcgttacgtagacgtgcaagtgagccggagagagattctccgctctggaaagaatgcc
aacaaagtcctggacaaggatctcgtcattacgggagacacagatcggcaaaaaagctgc
ttgggccacatgcagatattcgaaggtttaaacggagacaagcccaaatgctacatattg
cttcttggcaacgccggcatgggaaaaaccaccctggtcagaaagctgtgtcttgactgg
tccatgaactgcctcccacagtttgactttgtcttcgttttagacggcaaagccctctct
ttgtcagcggcgacccacagccttcagaccctcctgttagactcctcctcttttgccgct
ccctgcgccgacccggaggcggtgtacgcccaaattctcgccgcccctaagcgcgtgctc
gtcgttttcgacgggttcgacgagttgcgggactttgaaatacttctccagactcaagaa
aaggactcgatgacgtcgttgcagaaagacagcaaagcgcgggcctacacggtgagacag
ttgtattcggccgtcctccagaggctcctcctcccgggctgcacccttctgctcgccact
cgaccgagaggcgccgccagccagctgctcaggcggacggacagtcttctggaggtgtgc
ggcttcacccccaccaacgtggagacatatatatcccggtacttcaccgatcccgacgtc
ggagcagctgctttgaactgcttaaaaaactgcagctatctacgactcctctgttggaac
cctggactttgtcggttggtgtgcttggttttggaacggtgcaaaagttttgaggaccta
ccgagaactttaaccggactctgtcatcgagtgcttcgtctgaaactggaaaaggatgag
agtcaatcggaagtgcaaccagaagaagaagagcaaatctcaggaagttctcttgagaag
aggcgtcagaaaaacactcggacaaagcccggagcgctggttcgcactcgcacccgaagc
acgaaggggtccaaaaaacaggaggaagacggaggtgacgttgatggggtgggcataaag
agcgttggtggggaagtagataaagcagacagagagatgctgtcccagctgagctgtctg
gcctggaagggggtcaaagcaaactcctccatcctccccacagaatgggccgtatcggcc
gaactcgaggcgttcggccgacggacggggctcatctcctcttaccacccgaggccgagg
gaggtcgcctcaagtgacgagacagggggaggaggaagaccggatagagaggagatggca
agacgaaagattggagaaaagagaggaaagaagggcaggacgtcgactgaacacgtcgac
gtgagcgatgaccacatcctgtcgtgggccaacccgttccttcagagttacctggcagcg
gttcatctgtctctgtcaaggtccgtaacagaccgtgccttcctccagaccctccctttc
cagtcgggccagaaggaacgtcggcgacctcagagggaggagctcgagctcacccagcga
tttgccgtcggcctcctgttccacgaccggacggagctgccgaggcttcactcgtacacg
gaggcgtccttcggggacatggtggtcgccaagcaggctttagcaaccagacacctcgag
ggtctctcccatggtgacctgagccccgcccaggtcctggaggcctgccaccacgtctac
gaggcgagttttacgcgcggcgccggcagcggaggcggcggcggcgagcgattagtcgct
cacctggcggcgaacctaccagaagccctgacatttcgcggagtgccactcaagccgtcg
gacgtgttcgccgtgcagaacgttctggagaagggtggagctgaaggaaggaggttcagt
ttggatctcgaggattctgggatacagatttcgggacttgaagctctggtggggctcaac
aacatccacacatacagggcgtgcatcgccgacgtcatcgccttgtgggagcagctggag
cagaacggacaggaagtcctcctccgagaggccgtgtccaaattcaagatccatcccctg
aaagccacgcaggcgtgtcacatagagcacctggcgaagctggtgaacatacacacgcac
aggaggctgccggacagttccagccaatcagagtccatcctggcggagggagtgccggcc
gtcaaagagctacacaagctgcagttagagcttggtccagaaaaaagtccccaggttctt
ctcaagctctgggagctcctgccaggtctacacaacctgcagcacttagatctagagaac
agtaagattggggacaaaggagcagagcagttggctgatgctttatcttcacttggttct
ttggagatacttaatctcccacagaactgtatcggagaccagggggttaaaaaactagaa
accgcgctgaggaacctgcctaaactgcactgtttaagtctctacagtaatgagatttct
gacgaaggggcagagattttagcagatgttcttccacacatggcgtcactcaccgacctg
gacgtgaagtataacaagctgacagacgttggagcgcagatcttgggagccagtctaaga
aactgtaaaaagatgaagactctgaggatgtggaaccagtgtattccctacggagtgttg
gagagacttcagcagcaggacagcaggatccagtggcagtag
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integrated database retrieval system
