Clinocottus analis (woolly sculpin): 137787168
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Entry
137787168 CDS
T10471
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137787168 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137787168 (xab2)
03041 Spliceosome [BR:
cana03041
]
137787168 (xab2)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
137787168 (xab2)
Spliceosome [BR:
cana03041
]
Complex B
Other components
Prp19-related factors
137787168 (xab2)
Complex C
137787168 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
NRDE-2
LTN1_E3_ligase_6th
TPR_1
DUF4515
Motif
Other DBs
NCBI-GeneID:
137787168
NCBI-ProteinID:
XP_068435559
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAAKSILNMIYERALKELP
GSYKLWYNYLRERRKQIKGKVVTEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDVSFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKNEDEDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTIDALKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVH
FKQVDDLSAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATEAVDTGERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCQRFADMESKLGEIDRGRAIYSYCSQICDPRVTANFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATTSSAGTVSDLAPGQMGLDDMKMLEQKAQMLAAEAEQ
DKPKPKEKILFVRSDTSRTELAELSKQANPDEIDIDDEDEDDENQGPEEVQLEQKSVPTA
VFGGLKED
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccctcactaaacggaaagcccgatgttatgtttgaggacgatgatctgccatacgaa
gaggagatcatcagaaacccgtactctgtcaagtgctggatgcggtacattgaattcaaa
cagaatgcggccaaatccatcctaaacatgatctacgagcgggctctgaaagagctgccc
ggcagctacaagctgtggtacaactatctgagagagagacggaaacaaatcaaagggaaa
gttgttactgaaccaggctatgaagaggtcaataattgccatgaaagggcattggtgttc
atgcataagatgcccagaatttggcttgactactgccagttccttgtatctcaatgcaag
atcacgagaagtcggcaaacatttgaccgtgcactcagagctcttcctgttactcagcac
ccgcgtatctggcctttgtatctccgctttgcccgtaaccttcccctgcctgagacagcc
atccgagtgtaccgcaggtaccttaagctttctccagaaaatgcagaggaatacattgac
tacttacggtctgttggccgcttggatgaagcagctgtgcgattagcagcggttgtcaat
gacgtcagctttgtgtccaaagagggcaaatctaactatcaactgtggcatgagctgtgc
gacctgatctcccagaaccctgataaggtaacgtccctcaatgtcggggccatcatccga
ggaggcctcactcgcttcacagaccaacttggaaaactctggtgctctttggccgactat
tacatcagaagtggtcactttgagaaggcccgtgatgtgtatgaggaggccatccttaca
gtggtaacagtaagggatttcacacaagtgtttgatagttatgcccagtttgaggagagc
atgatcgcagcaaagatggagaccactgctgagatggggaagaatgaagatgaggacatt
gacatggagcttagactggcccgttttgagcagctgatagcccggcggcccctcctgttg
aacagtgttctactgcggcaaaaccctcataatgttcatgagtggcacaagcgggtaaaa
ttgtatgacggcaatccacggcagattatcaacacatacactgaggcggtgcagactata
gatgctttgaaggccacaggaaagcctcactctctttgggtttccttcgcaaaattctac
gaggaaaatgagcagctggatgatgccaggaccatttttgagaaggctaccaaggtacac
ttcaagcaggtggatgacctttctgcagtgtggtgtgaatatggagagatggagctacgc
catgagaactatgaacaggcactgcgcatactgaggaaagcgacggcaatcccatccaag
aaggcggagtactttgatgtatctgagccagtgcaaaaccgagtttacaagtcgttgaag
gtctggtccatgctggcggacttggaggagagtctcggcactttccagtctaccaaagca
gtttatgatcgcatcattgacctccgcatcgccacgcctcagatcatcatcaactatgcc
atgttccttgaagagcacaactactttgaggaaagcttcaaagcatacgagcgtggtatt
gctctcttcagatggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatgggggcaagaagctggagagagctagagatttatttgaacaagccctggat
ggctgccctgccaagtttgccaagaccatttacttgttgtatgccaaattggaggaggga
tatggattggcacgacacgccatggctgtctatgaaagagcaacagaggcagtagatact
ggggagagacatcacatgttcaatatctacatcaagagagcagctgaaatttatggagtc
acgtacaccagagccatttaccagaaagctatcgaggtccttcctgatgagcatgcaagg
gacatgtgtcagcgttttgctgacatggagagtaaacttggtgagattgatcggggcaga
gcgatctactcctactgctcgcagatttgtgacccacgggtgactgcaaatttctggcaa
gcctggaaagaatttgagatccgccatggaaatgaggacacgattagagaaatgctgagg
atcaaacgtagtgtccaagccacatacaacacccaggtcaactttatgacctctcagatg
atgaaggcaacaacaagctctgcaggcactgtgtcagatcttgctccaggccaaatggga
cttgatgacatgaagatgctcgagcagaaagcacagatgcttgctgcagaggccgagcag
gacaagcccaagcccaaagagaagattctcttcgtcaggagtgacacctctcgcaccgaa
ttggctgaactttccaaacaagccaatcctgatgagattgatattgatgacgaggatgaa
gatgatgaaaaccagggaccagaggaggtccagcttgaacagaagagtgttcccacggcc
gtctttggagggcttaaagaggactaa
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