Clinocottus analis (woolly sculpin): 137787217
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Entry
137787217 CDS
T10471
Symbol
rfx1a
Name
(RefSeq) MHC class II regulatory factor RFX1a isoform X1
KO
K09173
regulatory factor X 1/2/3
Organism
cana Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cana03000
]
137787217 (rfx1a)
Transcription factors [BR:
cana03000
]
Eukaryotic type
Other basic domains
RF-X
137787217 (rfx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BCD_RFX
RFX1_trans_act
RFX_DNA_binding
Motif
Other DBs
NCBI-GeneID:
137787217
NCBI-ProteinID:
XP_068435630
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MGPFRPQTHTQAGRCYGDVKCKSVISSLVMATSGYVVEIQPAAQPQGAGVTVTAGQPDDS
SSPESAPQFLAEIQASVATSTIVAPTGQTTPTDQATSITTPEPADVSQAQSTAQAQPPHT
QYVTAEIQGSPTQSGNAQSTPQYIVVTVTEGSLHSSDSLSDSSSPPAVVQTGVPTQVVQQ
VQAAQQRSVVQATSQIAKTEPGTQLSVTSLQPVHISQEFPPCSEMTALVRNTNLEEWQLQ
HVIGQPECQAMVSADYISECCSRPIYLPMDFLQYYQSLPLLSVYAEKEIGGAHPAVTSSG
LDQPPSQTTTTTFQVQQQLTPVPVQHVYANQVQYVEGEETNYSTSTIRSSAFPYTDTPLY
TQTTAAQYYEGQPTSGSQASTPGTPLTVSVTAGTTGGVSMFVAQPTSAAGGGATVVTTSG
TTNGAGDGPGTNGGAAGSYVIQGGYMLGSSSGGAAGNSQNYSHTARASPATVSITEGEEG
SVPSADKKVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMG
LRTRRLGTRGNSKYHYYGLRIKAGSSLLRLMEDQQHLAMRQQPFSQKQSRLKPVHKVEGL
TNGTAAGAGQQQQQQQGSGQVDISTQVQQYQQFLDASRALPDFPDIDLQGKSLPEGIELE
HIKSFQLLYREHCEAILDVMVNLQFTLVETLWKTFWRFSQNQAGDATLAVHDESEKRLPK
SCLVVLCKYDPVLRWSRDCDNSLYQSLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTN
AMMNIPEEMVRIKVTSANAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFA
NVQEQASWVCRCEDRVVQRLEQDFKLTLQQQNSLEQWAAWLDGVVSQVLKPYQQSPAFPK
AAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIA
VMGEFASLGRGLHQLDPDKEEEEEEEDESDDEGQELSLPSDAVLLGDESLEPPAKLARMD
QRVLFTTGSVDN
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggggccgtttcggccacagacgcatactcaagcaggccgttgttatggcgatgtcaaa
tgcaaaagtgtgatttccagccttgtaatggccacctcaggctacgtagttgagatccag
ccagcggctcaaccccagggtgctggtgttactgtgacagcaggtcaacctgacgacagt
tctagccctgaatctgcacctcagtttctggctgagattcaggcttccgtcgccacttcc
actattgttgcacccactggccaaactactcccactgatcaagccacctccatcaccact
ccggagcctgcagatgtcagtcaagcccagtccacagcacaggcccagcctcctcataca
cagtatgtaactgcagagatccagggctcacccacacagtctggaaatgcgcaaagcact
cctcagtacatcgttgttacagtcacagagggctcccttcactcaagtgacagcttgtca
gactccagctcacctccagctgtggtgcaaacaggagttcccacgcaggttgttcagcag
gtacaggctgctcaacagaggtcagtggtgcaggccacctcccagatagccaagactgag
ccgggcactcagctcagtgtcaccagtctacagcctgttcatatcagccaggagttcccc
ccttgtagtgagatgacagcgttagtcaggaatacaaatctagaagagtggcagcttcaa
catgtgataggacagccagagtgccaggccatggtatcagcagactacataagtgaatgc
tgcagcaggccaatatacctccccatggacttccttcagtattaccagtcactgcccttg
ctatctgtttatgccgagaaagagataggaggagcccaccctgcagtcacaagctcaggc
ctcgatcagccaccatcgcaaactacaaccactactttccaagtccagcagcagctcaca
ccagtgcccgtgcaacatgtctatgccaatcaagtgcagtatgtggaaggagaagagacg
aactacagcaccagtaccatccgttccagcgcctttccctacactgacacccccttatat
acccagaccacagctgcccagtattatgaaggtcagccaacttcaggctcacaggcttcc
acccctggcacacctctaacggtctctgtcactgctggcacaacagggggtgtgtcaatg
tttgttgcccagcccaccagtgcagcagggggaggggccaccgtggtgaccacaagtggc
accaccaatggggcaggggatggtccaggcaccaacgggggcgcagcaggcagctatgtg
atccaggggggttacatgctgggcagcagcagtggaggggcagctggcaacagtcagaac
tactcgcacaccgcccgcgcctccccagccactgtgagtattacagagggcgaggagggt
agcgtgccgtcggcagacaagaaggtacagtggttgctggacaactacgagacagctgaa
ggagtgagtctgccacgttccaccctctactgccactatctgctgcactgccaggagcag
aagctcgagcctgttaatgctgcatcgttcgggaaactcattagatctgtgttcatgggg
ctacgcacacgacgcctgggcacacggggtaattcgaaataccactactatgggctgagg
atcaaggccggttcttctcttctccgcctgatggaagaccagcagcatctggccatgagg
cagcagcccttctcacagaaacagagcaggttgaagcctgtgcataaagtagagggactg
accaatgggacagcagccggagcaggccagcagcaacaacagcagcaggggtcagggcag
gtggacatcagcacccaagttcagcagtaccagcagttcctagatgcatcccgagctctc
ccagatttccccgacatcgacctccaggggaagtctctgccggagggaatcgagttggag
cacataaagagctttcagctgctgtacagagagcactgtgaggccattcttgatgtgatg
gtcaacctgcagtttaccctggtggaaactctgtggaagaccttctggaggttcagccag
aaccaggctggagatgccacgttggctgttcatgacgaatcagagaagcgcctccctaag
tcctgtttggtggtgctgtgcaagtatgacccggtgctgcgctggagccgggactgtgac
aacagcctgtaccagagcttggtggagatcctcatccctgatgtcctcaggcccatcccc
agtgccttaactcaagccatccgtaactttgccaagagcctggagagctggctgactaat
gccatgatgaacatcccggaggaaatggtccgcatcaaggtaacatcggccaatgcattt
gcccagacactgcgtcgctacaccagtctgaaccatctcgcccaggcagcccgcgctgtt
ctccagaacacggcccagatcaaccagatgctctccgacctgaaccgcgtcgacttcgct
aacgtccaggagcaggcttcatgggtgtgccggtgtgaagaccgtgtcgtccagcgactg
gagcaggacttcaagctgaccctccagcagcagaactccctggagcagtgggctgcgtgg
ctggatggtgtcgtctcccaggtgctaaagccctaccagcagagccctgccttccctaag
gccgccaagctgtttctcctcaagtggtccttttacagttccatggtgatcagggacttg
accttgaggagtgcagccagctttggctcctttcacctgatccgcctgctgtacgatgag
tacatgtactacctgatagagcacagagtggcccaggctaaaggagaaacccccattgct
gtcatgggagagtttgccagtttaggccggggtctccatcagctggatcctgacaaagaa
gaggaagaggaggaggaggatgagagtgacgatgaaggtcaggagctgtctcttccctcg
gacgcggtcttgctcggagacgagtccctggagccgcccgccaagctggcccgaatggac
caaagagtcctcttcacaactggatcggtggacaactaa
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