Clinocottus analis (woolly sculpin): 137787893
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Entry
137787893 CDS
T10471
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03015
mRNA surveillance pathway
cana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137787893 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
137787893 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137787893 (pabpc4)
03041 Spliceosome [BR:
cana03041
]
137787893 (pabpc4)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137787893 (pabpc4)
mRNA cycle factors
Stress granule specific factors
137787893 (pabpc4)
Spliceosome [BR:
cana03041
]
Complex C
Other components
Complex C specific factors
137787893 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RRM_occluded
RBD_RDR6
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
137787893
NCBI-ProteinID:
XP_068436754
LinkDB
All DBs
Position
Unknown
AA seq
627 aa
AA seq
DB search
MNTETGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDEMTDDQLKEVFDRYGKTLSVKVMIDPTGKSRGFGFISYEK
HEDANKAVEEMNGSDLNGKTVFVGRAQKKMERQAELKRKFEVLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRTMPANAIINQFQPASGYFMPAVPQAQNRTT
YYAPNQMAQMRPNPRWQQQGGRGQGGYQGIPSSLRQPGPRANLRHMSPGGGSQGPRASGQ
TMAPRPSMGVPGPRAMPPYKYASGVRNPNPQVVQPIALQQAQPAVHVQGQEPLTASMLAA
APPQEQKQMLGERLFPLIQSMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKVGSIAPTVAAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggagaccgggagttatccgatggcttctctctacgttggcgacctgcacccc
gatatcacggaggcgatgctgtatgagaaattcagcccagccggaccggtgctctcgatt
cgggtgtgccgcgacatgatcacccggcggtccctcggatacgcttatgtgaacttctct
cagcccgcggacgctgagagagcgctggacaccatgaactttgacgtggtaaaagggaag
ccaatcagaatcatgtggtcccaacgagacccctccctcaggaaatctggagtgggcaac
gtgttcatcaaaaaccttgacaagtccattgacaacaaagccctgtacgacaccttctct
gcctttggcaacatcctctcctgcaaggtggtgtgcgatgaaaatggctccaagggctac
gcctttgtccactttgagacccaggatgctgctgaccgggccattgagaagatgaacggc
atgcttctgaatgaccgcaaggtgttcgtgggccgtttcaaatctcgcaaggaacgggag
gctgaacttggtgccaaagccaaggagtttaccaatgtctacatcaagaactttggagat
gagatgactgatgaccagctgaaggaggtttttgacagatatggtaaaacactcagtgtg
aaggtgatgatagaccccaccggcaaatccagaggctttggcttcattagttatgagaaa
catgaggatgctaacaaggctgtagaggaaatgaatggcagcgacctcaacggcaagact
gtgtttgtgggccgggctcagaagaagatggagcggcaggcggagctgaagaggaagttt
gaggtgctgaaacaagagaggatcagccgttatcagggtgttaatctttacattaagaac
ctggatgacaccatagatgatgagaaactgcgcaaggagttctctccattcgggtctata
acaagtgctaaggtgatgctagaggagggtcgctccaaggggttcggctttgtctgtttc
tcctcccccgaagaggccaccaaggccgtgactgagatgaacgggcgcattgttggctcc
aaacccctctacgtggctctcgctcagcgcaaagaggagcgcaaagcccacctcaccaac
cagtacatgcagcgcattgccggcatgaggaccatgccggctaacgccatcatcaatcag
ttccagcccgccagtggctacttcatgccagctgtgcctcaggcccagaataggactaca
tactatgcacccaatcagatggctcaaatgcgacccaaccccagatggcagcagcaaggg
ggcagaggtcaaggtggctaccaagggatccccagctcgctgcgtcagccaggaccccgt
gccaacctgagacacatgagccctggtggcggctcacaaggcccacgagcctccggccag
accatggctcctcgtccctcaatgggagtccccggaccccgggccatgcctccttacaaa
tatgccagtggtgtccgtaaccccaacccccaggtggtgcaacctattgccttacagcag
gctcagccagccgtgcacgttcagggccaggagcctctcacggcctccatgctggctgct
gcgccccctcaggagcagaaacagatgcttggtgagcgtcttttcccgctgattcagtcc
atgcatgccaacctggcaggaaagatcaccggcatgttgctggagattgacaactctgaa
ctgctgcatatgcttgagtcccatgagtctctgcgctcaaaggtggaagaagctgtcgcc
gtgcttcaagcccaccaagcaaagaaagatgccacccaaaaagtgggcagcatagctcct
actgttgctgctgccacatcctga
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