Clinocottus analis (woolly sculpin): 137788079
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Entry
137788079 CDS
T10471
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
cana Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cana03021
]
137788079
03041 Spliceosome [BR:
cana03041
]
137788079
Transcription machinery [BR:
cana03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137788079
Spliceosome [BR:
cana03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
137788079
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
137788079
NCBI-ProteinID:
XP_068437002
LinkDB
All DBs
Position
Unknown
AA seq
1511 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFVQKCKPEYKV
PGLYVIDSIVRQSRHQFGMEKDVFAPRFSKNIIATFQQLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGILPPSITPVMSSSAAPVNNTTPGTPATPATPANIVQGLPDWAS
QINNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSINPLEQRVSSFNKKLLGPFDFGNDSERGEESKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQHQQKAMIEGQDSIFGHDNSGASAQSSSSQPQLPEPD
NKLDDTIDNQQQDMDLDEGPDGMEEEIFEAEEKKIASTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERHAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIG
SKIIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGIIDQETVNDEWE
AAKNAEPVKEVTSQPISVETPAASNTQTETYNQQVTMMPVQLPVAQTVPSAVGLVPPTFP
VTMGIPPPGYGPPPPFLRAGFNASQPPPGFMQAAQTAAMVSAVNSLVQPSVASSQEAVKE
SPFSAMIPPSNTIPGGFMAGVFNPVLHAQQATNEKSLQSADGMDAAAELTLRGMQNAVRS
GMGLLGMHPTASLTHQLHQSGLAGQRMSGLLPLDVRPNLLQPGAAARFPLLMQQGPVQQA
AGLLESSLQAQARARAPFSQLDPFNRAPNPNNENVSKAEEESSSGADEGKDQDYRFPPME
KHSTGLLRTPPPEQREPPSGSGGGGSGGAAGGGAGGRPPLLQTPGTQPARTSLLGRLQAL
AGFTPDNRWNQTRGDFDERDGLRAALQAPPAPKGFQEERPSGPTPGQNFPNRFESRPGTA
AAAAAGGGGGGAAAAAAAVAGVSGNAGAVGGPQAWNRSSGGAAAPFDSELHQDLDERRRP
WDRQRDRDERDFDFRREMNGNRHSRERDRERERDRDRDRDRERDRDRERGRDRPREHERE
RDRDKERDRERDRERGGWTPLLPLPTPLLPTPPLNPNLTLNQGKLLAPLKLNPQIQQRFQ
SPLLAQAQGKPSLLGLNQPLPQVQTKSPPPSQSQAAVLEHQSEPPAPSETCRAQSPPVAH
SPDQSSDDKGESPSTEAPIQAESSLQPETPPQIKSPSQLKTQTPAQSPAQTPTQSPTQSP
SQSPAQSPAQSPAQSPAQSPAQSPPQSPAQSPAQSPAQSPAQSPSKTTASPDTETPSQAS
PMVEASSQDSPVAFTQAVSPPEETHSLEEQESPRQDEEESPERASSPQPPWVNGGGMDNS
TVAESTPETSPESSPERFPEPTEEPSPNSVLPESEPEQLASPEDVDNEQSEPMEESASQP
VLDTVTDTEGT
NT seq
4536 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcctttaacaatgagctgtactcattgaatgagtacaagccaccc
atctccaaggccaagatgacccagatcaccaagtctggaatcaaagctataaaattctac
aagcatgttgtccagagtgtggagaagttcgttcaaaagtgcaaaccagaatacaaggtc
cctgggctgtacgtcatcgactccattgtcaggcagtcgcggcaccagtttggcatggag
aaggatgtgttcgcgccacgcttcagcaagaatatcattgcaacgttccagcagctctac
cgctgcccttcagatgataagagtaagatagtgcgagtcctgaacctgtggcaaaagaat
gcagtcttcaagagtgacattatccagcctctgttggacatggcggcagggattctccct
cccagcatcacacctgtcatgtccagcagtgccgctccagtcaataacactacacctggt
accccagctacccctgccacccccgctaacatagtccaaggtcttcctgattgggcttcc
cagattaacaatacagacactgtggctgctgttgcacagatcctacagagtccccaagga
caacagctgcagcagctggtgcagagtctacagatgcagcagcagaagccccagccgtcc
ctgctgcaggccttggatgctggcctggtggtacagttgcaagctctgacagctcaactc
accgccgccgctactgccaacagcatcaaccctctggagcagagagtgtcctcttttaat
aagaagcttctgggtccttttgattttgggaatgattctgaacgcggtgaagaatctaaa
aaggactcctcgtcatctcagttgccaatggtgtcagagcccatcaacagctccctcttc
catcagctggctgagcagctacaacaacagaacctggaacagtttcagaagcagctatta
gagcaccagcagcaccagcagaaggcaatgatagaagggcaggactcaatctttgggcat
gataactcgggtgcatcagctcagagcagcagcagccagccacagcttcctgagccagat
aacaagttggatgacaccatagataaccagcagcaggacatggatctggacgagggccca
gatggtatggaggaggagatctttgaggcagaggagaagaagatcgcgagtacacgttca
cgaacacgctcaagatcacgctccaggtctcccaagaggagacggtccaggtcccgctcc
ggctcacgtaaacgtaaacaccgtaagcggtcgcgctcacgctccagagatcgcaagagg
aagtcatcacggtcttactcaagcgaaagacacgcccgagaacgagaaaaggagcggcag
aagaaaggactgcctcccatacggtccaagactctaagtgtgtgcagcacgactctgtgg
gttggccaggtggacaaaaaagccactcagcaagacctcactaacttatttgaagagttt
ggccagattgaatcgatcaatatgatccctcccagaggctgtgcctacatctgtatggtc
cacagacaggacgcgtaccgcgcccgccagaagctcagcactggctccttcaagattggc
tccaaaatcatcaagattgcctgggctctgaacaaaggggtaaagcaggagtacaagcag
ttttgggacgtagacctgggcgtcacctacataccttgggagaaggtgaagctggatgac
ttggatgactttgccgagggaggaatcattgaccaggagacagttaatgatgagtgggaa
gcagccaagaatgctgagccagttaaggaagttacaagtcagccaataagcgtggagact
ccagcagcatccaacacccagactgagacctacaaccagcaggtcaccatgatgcctgtc
cagctcccagtggcccagacggttcccagtgctgtaggtttggtgcctcctaccttccct
gtcaccatgggcatacctccaccaggctatgggccaccaccacccttcttacgggctggc
tttaatgcctcacagcctccgccaggtttcatgcaggcagcacagaccgcagccatggtc
tcagcagtcaattcgttagtgcagccttcggtggcaagcagccaagaagctgtcaaggaa
tcaccatttagtgctatgatccctccgagcaacactatccctggcggcttcatggctggt
gtcttcaacccagttctccacgctcagcaggccaccaatgagaagtcattacagtctgca
gacggtatggatgctgctgcagagcttacactgcgaggcatgcagaatgcagtccggagt
gggatgggtctccttggaatgcaccccacagcttcgctcacccaccagctgcatcagtcc
ggtctggctggtcagagaatgtctggcctgctgcctctggatgtgcgacctaaccttctc
caacctggggctgccgcccgcttcccactgctcatgcagcagggccctgtccagcaggct
gctggcctccttgagagttccctccaggctcaagcccgtgccagagctcccttctctcag
ctggaccccttcaacagggctcccaaccccaacaatgaaaacgtatccaaggcagaagag
gagtcttcctctggagctgatgagggcaaagaccaggactatcgcttccctccaatggaa
aagcatagcacaggcttgctgaggacccctccaccagagcaaagggagcctcctagcggt
agcggtggaggtggaagtggcggagcagcgggaggtggtgccggaggtaggcctcccctt
ctccagaccccagggactcagccagccagaaccagcctattgggacgtctgcaggctctt
gcaggcttcactcctgataaccgctggaaccagaccagaggggactttgatgaacgagat
ggcctgcgagcagccctacaggcccctcctgctccgaaaggcttccaggaagagcggccc
agtgggcccactcctgggcagaacttccccaaccgctttgaaagccgtcctgggacagca
gcagcagcagcagcaggaggaggaggaggaggagcggcggcagcagcagcagcagttgct
ggggtttcgggcaatgctggggctgttggggggccacaggcctggaaccgtagtagtggt
ggtgctgcagcaccttttgacagtgaactacatcaagacctagatgaacgaagacgcccg
tgggacaggcaaagagacagagatgaaagagattttgactttaggagggagatgaatggc
aaccgccacagcagagagagagaccgggaacgcgaaagagatagagatagagacagagac
agggagagagacagagacagggagcgaggcagagaccgcccaagagagcatgaacgtgag
agagaccgcgacaaagagagagaccgtgagagggaccgtgaacgtgggggctggacacct
ctgctccctctgcctactcctctgcttcccactccacctcttaatccaaatctgaccctg
aaccaaggcaagctgctcgcaccactcaaattgaacccccagattcagcagcgattccag
tcccctctcttggcccaagctcaagggaaaccgtctctcttgggtctgaatcagccactg
cctcaagttcagactaagtctccacctccatcgcagagccaagcagctgtgcttgagcac
cagtcagaacccccagctccgtctgagacatgtagggcacagtcaccgcccgtagcccac
tcacctgaccagtcatctgacgacaaaggtgaaagtccatcgactgaggctcccattcag
gctgagtcatcactacaacctgagaccccgccacagataaaatcgccatcccaactcaag
actcagaccccagctcaatccccagctcagactccgactcaatccccgactcaatcccca
tctcaatccccagctcaatccccggctcagtccccagctcaatccccagctcaatcccca
gctcaatccccgcctcagtccccggctcaatccccagctcagtctccggctcaatcccca
gcccagtccccgtccaaaaccactgcttctccagacactgagaccccaagccaagcctca
ccgatggttgaggcctcatcccaagactcacctgtggccttcacacaagctgtcagcccc
cctgaagagactcactctctggaggagcaggaaagcccaaggcaggatgaggaggagtca
ccagagagagcatcctcaccccaacccccgtgggtcaatggaggtgggatggacaatagc
actgtggctgaatctacacctgagacctctcccgagtcctctcccgagcgctttcctgag
cccactgaagaaccctctcccaactctgtgctccctgaaagtgaaccggagcagcttgcc
tctcctgaggacgtagacaatgaacagagtgagcccatggaggaatctgcgagtcagcca
gtgctagacactgtcacagacactgaggggacataa
DBGET
integrated database retrieval system
