Clinocottus analis (woolly sculpin): 137788431
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Entry
137788431 CDS
T10471
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04382
Cornified envelope formation
cana04510
Focal adhesion
cana04512
ECM-receptor interaction
cana04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137788431
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137788431
09142 Cell motility
04820 Cytoskeleton in muscle cells
137788431
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137788431
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cana04147
]
137788431
00536 Glycosaminoglycan binding proteins [BR:
cana00536
]
137788431
Exosome [BR:
cana04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137788431
Glycosaminoglycan binding proteins [BR:
cana00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137788431
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
137788431
NCBI-ProteinID:
XP_068437307
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MLLTSCSALRSSTRLWCVLMILSAPPAVLGGELTEPCGGRDCSTCQCLPAKGARGSPGPL
GRQGPQGPPGFPGPLGPPGQKGQRGGEGPPGAAGLKGTSGSVGVPGFPGLEGIPGHPGPA
GGPGFPGLDGCNGTRGGGGAPGPPGAPGADGEPGFDGLKGFPGDPAVYFIQYPGVPGDVG
SGGLPGRQGELGLPGPLGVLGPPGLDGTNGLPGLPGSRGAPGEKGRSLPGQKGDEGDQGL
QGPPGPFEYVDPPEDLYLKGEQGTQGPKGVCGRPGLPGLDALPGTKGEKGIVGFPGPRGF
SGLSGLPGNRGLKGIPGSPGLPGLIGREGPKGMLGDLGPKGLPQNVVVTHSGDVGDPGAP
GPRGPPGDLGLMGMHGPPGGPGRSVPGPAGAEGLKGSAGSRGDKGDPGQVYRDRPTPGEP
GKPGYPGPRGLKGEQGRPGSYCLPGAQGESGPPGDRGPPAVQGLLGFKGSPGDCFCGPPV
VLRGPLGLVGDLGSPGFPGSPGAPGLRGVEGLPGDTGERGRQGLGGFPGVKGFKGQKGDF
TMVDFKGEKGNIGQQGPPGRQGLSGRKGLNGPPGAPGSPGPEGESFASSPGERGFPGYPG
QKGSSGPSGLTGRGVVGAVGQRGDPGSPGPEGLLGPSGPKGVKGDTLPCVPRNPGHPGEK
GDIGDAGYRGLPGPPGFRGITGPDGPKGDNGRPGLLGPPGRQGPPGSVGDTGKEGSEGFS
YGGDPGSPGLPGSFGLRGPAGESDVGPSGPIGFPGRLGSQGPKGVPGLPGVSGLKGLPGL
AGGPGVEGQRGQDGAPGRTGPQGPKSDFCDAGKLGASGLFGPQGPIGPPGFSGEKGEIGQ
EGTPGYGPQGPQGKPGSPGFSGYPGPQGPSGPGGDSGLPGLCGQTGPMGPQGQAGGPGAP
GRTGALGPLGRQGERGSNGRDGGPGCEGRKGEKGCKGAPGPPGETKGVPIKGDRGKDGPP
GTNGFPGPRGNKGFQGPPGKLGCQGVNGPVGAVGLLGPPGPDGPPGPSGSPGGPGPTGFI
GFPGETGDPGDPGCPGKDGEPGHQGCTGSKGDKGDSVSCSGPPGDEGPFGDLGPQGPPGP
QGIPGRPGFLGVPGQRGCKGDPGHQGELGPPGVVGPSGPRGRSGLPGLPGEAGADGPPGP
LGFLGLPGPPGPLGLHGLDGLKGVKGDMGTRGLGQSGAPGCLGLPGDKGPPGPPGPMGSS
QNGPPGPTGPPGAKGPPGDSGPPGEPGPDCKAPIPGPAGDPGPTGPDGEPGCAGEMGDPG
QNPPVPGDDGDNGDTGCQGPGGLQGPQGPDGLPGIPGNTGVKGLRGSSGLMGLPGNRGSR
GCTGPDGPPGPKGSTGPVGPKGEVGRVSSCPTYPPAMPGPPGPPGPDGLDGDVGVQGETG
RTGPKGRKGDIGCEGPIGPEGPSGPDGGRGEPGRPGKRGVVGAKGDPGPIGDRGPRGPNK
NLNSGFLLVLHSQSKAVPSCPRDMRVLWVGYSLLYLEGQEKAHTQDL
NT seq
4462 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctccgccctccgcagctccacccggctctggtgcgtcctgatg
atcctgtcggctcctccagcagttctcgggggcgagctcaccgagccgtgcggcggcagg
gactgctccacctgccagtgtttaccagccaaaggagcaagggggtctccaggccctctg
ggccggcaaggccctcaggggcccccgggcttcccgggccctctggggcctccagggcag
aagggccagagaggaggcgaaggcccgccaggagcagccggactgaaaggaacctcgggg
agcgtcggcgttcctggttttccgggtttagaaggaatcccgggtcacccgggtccagct
ggaggtccggggttcccgggtctggacggatgcaacggaaccagaggagggggaggggcc
ccggggccgcccggagcgccaggagccgacggggaaccgggttttgatggactgaagggg
tttccaggagatccagccgtgtacttcatacagtaccctggagtacctggagacgtgggc
tctggtggacttcctggtcggcagggtgaactgggtctgcccggtccgctgggggttctg
ggtcctccaggactcgacgggaccaacggtctccctggtctgcccggctccaggggcgcg
cctggagaaaaaggtcgatctctgccgggacagaaaggagacgagggggatcagggcctc
caggggccgccggggccctttgagtacgtggaccctccagaagacctgtacctgaaagga
gagcagggcactcaggggcctaaaggagtctgtggaaggccaggtctgccgggtctggac
gctctccccgggaccaaaggagagaaaggcattgtggggtttcctggtcccagaggattc
tctggtctctctggtctgcccggcaacagaggactcaaggggattccaggaagtccaggt
ctcccaggtctgattggacgagagggtccgaagggcatgctgggagatctgggtcccaaa
ggcctcccccagaacgtggtcgtcacacactcaggtgacgttggagaccccggggccccc
ggacccaggggccctccaggagacctggggctcatggggatgcacggcccccccggaggt
cccggccgatccgtaccgggtccggcaggtgctgagggtctgaagggaagtgcagggtcc
agaggggacaaaggagatccaggtcaggtgtacagagacagacccacacctggagaacct
gggaaaccaggatatcctggacccagaggactgaaaggagagcaggggagaccaggtagt
tactgtcttcccggggctcaaggagagtctgggcctccaggtgatcgggggcccccggcg
gtccaaggcttgctcgggttcaaaggtagtcctggcgactgtttttgcggccccccagtc
gtactgaggggccccctcggccttgtgggagacctggggtctccagggtttccaggatct
ccaggggccccgggtctgagaggagtggaaggtttacccggagacacaggagagcgcgga
cgtcagggcctgggaggatttccaggtgtcaaagggttcaaaggtcagaagggagatttc
accatggtggattttaaaggtgagaaaggaaacattggccagcaaggccctccaggcagg
caaggactctcagggagaaaaggactcaatgggcccccgggcgctcctggaagccccggc
ccagagggtgaaagtttcgccagttctcctggagaaagaggcttccctggatacccgggg
caaaagggctcatcagggccttcaggcctgacggggcgaggtgtcgtcggagcagtagga
caacgtggggaccctgggagcccgggacctgaaggactcctgggcccctcgggaccgaag
ggggtcaaaggcgacactctgccctgtgtgcccagaaaccccggccaccctggtgagaaa
ggagacattggagatgcaggttacagaggactgccgggtccgcctggtttccgtggcatc
actggacctgatggacctaaaggggacaatggtcggcctggactgcttggaccacctgga
cgacaaggacctccaggttctgttggtgataccggaaaagaaggatctgaaggcttcagt
tatggtggcgatccaggttctccggggctcccaggctcttttggactcaggggcccagca
ggtgagtctgatgttgggccctcgggacccattggcttcccgggacgtctgggctcccag
ggacctaaaggagtccccggcctccctggcgtcagtggactaaaaggactcccgggtctg
gcagggggccccggagttgagggccagagaggacaagatggggcccctggtagaactggc
ccccaggggcccaaatctgacttctgtgacgcagggaaacttggtgccagtggccttttc
ggccctcaaggacccatagggccaccaggtttttctggggagaaaggtgagatcgggcag
gagggtactccaggttatggccctcaaggccctcaaggaaaaccaggctctccaggtttc
tcaggatacccggggccccagggcccctctgggcccggtggagactctggactgcccggg
ctctgcggtcagacaggtccgatggggccgcagggccaggccggagggccgggggcccct
ggacggaccggggccctcggacccctggggaggcagggggagagaggatccaacggacga
gacggaggtccaggatgtgaaggtcggaaaggagagaaaggctgtaaaggggccccgggg
cctccaggagagaccaagggcgtccccatcaaaggagacagagggaaagatggaccccct
ggaaccaacggctttcctggaccacgaggaaataaaggtttccaaggtcctcctggtaag
ctggggtgtcagggcgtcaacggacccgtaggcgccgtaggacttctgggaccacctggg
cccgacggaccaccggggccttcaggatcacctggaggccccggaccaaccggattcatc
ggcttcccaggggagaccggagatccgggtgatccgggctgtccaggaaaggatggagaa
cccggccaccaaggatgtactggatccaaaggtgataaaggagactccgttagttgttct
ggtcctcctggagacgaggggccttttggagacttggggccccaaggaccgcctggacct
caaggaattcctggaagacccggtttcctcggggttccaggacaaagaggatgcaaagga
gatccaggccatcagggggaactgggtccaccaggtgtggtcggtccctcgggtcccaga
ggccggtccggtcttccaggtcttcctggtgaagcaggtgctgatgggcctccaggacct
ctcggcttcctgggacttccaggtcctcctggaccgctcggccttcacggactggacgga
ctgaagggagtgaagggcgacatggggaccagaggtctggggcaatcgggtgctcctggt
tgtcttggtcttccaggcgataaaggtcctccgggtcccccgggaccgatgggttcatcc
cagaacggccctccggggcccacgggacccccaggggccaaaggaccgccaggggattcg
ggacctccaggtgaacccggaccagactgcaaagctccgatcccaggacctgctggagat
cctggtcctactggaccagatggagagccagggtgtgctggtgagatgggggatccgggt
cagaaccctccagtacctggggacgatggggacaacggggacacaggttgccaggggccc
gggggcctacaaggacctcaggggcccgatggactgccagggatcccaggaaatacggga
gtgaaaggtctgcgggggtcttctggtctgatgggactgcctggtaatcggggttctaga
ggctgcaccggtcccgatggaccaccaggaccaaagggatccactggaccggtgggtcca
aagggcgaggtgggacgagtctcatcttgtcctacttaccctcccgcgatgccgggtccc
ccaggaccccccggccccgacggtctggatggagatgtcggcgtccagggagaaaccggc
cggacaggacccaaaggtaggaagggggacatcgggtgcgagggaccaataggccccgag
gggccctcgggtccagatggaggccgaggagagccaggccggccggggaagcgcggcgtc
gtgggagccaaaggtgatcctggaccaatcggtgaccgcggccctcgtggaccaaacaaa
aacttgaactctggcttcttgttggtgttgcacagccaatcgaaggctgttccctcctgt
ccacgcgacatgagggtcctctgggtcggatacagtctgctgtacctggagggccaggag
aaggcccacactcaggacctgg
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