Clinocottus analis (woolly sculpin): 137789244
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Entry
137789244 CDS
T10471
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03040
Spliceosome
Brite
Enzymes [BR:
cana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137789244
Spliceosome [BR:
cana03041
]
Complex C
Other components
Step II factors
137789244
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
Flavi_DEAD
GIPC1_GH2
ABC_tran
AAA_19
nSTAND3
T2SSE
AAA_16
AAA_30
TsaE
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
137789244
NCBI-ProteinID:
XP_068438704
LinkDB
All DBs
Position
Unknown
AA seq
1205 aa
AA seq
DB search
MAASDEIQRLEYLSLVSKVCTELENHLGISEKDLAEFIIDLAEKQPTFEGFKAALFQNGA
DFTDTFIGNLLRLIQTMRISPSTSTAHQSEEGKDNLKDKYPALCKPDDPVWRIPPCHPEK
DDEKVAAAAMKELEMLMPDFCGASASDGNQGAARGRDADRPTGRRRSRSRSRSRDRDGDA
NPARKRKRVSRWSDHPPSPRRDDGGGGSSSNNNAATTTNNNNNAAGNNKKDERDSDRWRD
RLVDRPPAEEPVVGDVYNGKISSLMQFGCFVQLEGLRKRFEGLVHISELRKEGRIANVAD
VVTKGQKVKVKVLSFTGTKASLSMKDVDQQTGEDLNPNRRRNLDPAVGDEAMRNPDRPVE
ASMADAEENPLERKRLAKITDLEKWEIKQMIAANVLPKEEFPEFDEETGILPKIDDDEDE
ELEIDLVEEEPPFLRGQTKFSTNMSPVKIVKNPDGSLSQAAMMQSALSKERRELKQTARA
AEMDSIPTGIHKNWIDPMPDYEGRQIAANLRGIGAMPIDLPAWKRYAFGGNQVSYGQRTE
LSILQQRETLPIFKLKDQLVQAVHDNQILIVVGETGSGKTTQITQYLAEAGYTSRGKIGC
TQPRRVAAMSVAKRVSEEYGCRLGQEVGYTIRFEDCTSTETVIKYMTHGMLQRECLLDAD
MSQYSLIMLDEAHERTIHTDVLFGLLKKTIQKRKDMKLIVSSATLDAVKFSQYFYEAPIF
TIPGRTYPVEVLYCKEPETDYLDASLITVMQIHLMEPPGDILVFLTGQEEIDTACEILYE
RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVIIATNIAETSLTIDGIYYVV
DPGFVKQIVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTT
NVPEIQRTSLASTVLSLKAMGINDLLSFDFMDAPPMETLIIAMEQLYTLGSLDDEGLLTR
LGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNIFYRPKDKQTQADQKKTKF
FQPEGDHLTLLAVYNSWKNNKFSNPWCFENFVQARSLKRAQDIRKQMMSIMDRHKLDVVS
CGPATMRVQKAICSGFFRNSARKHPHDGYRTLIDQQVVYLHPSSTLFNRQPEWLVYHELV
LTTKEYMREVTTIDPRWLVEFAPAFYRVGDPTRLSRQKRMQKLEPLYNRYEEPNAWRISR
AFRRR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttcggacgaaatacaacgtctcgagtatttatcgttggtgtcgaaggtgtgc
acggagctggagaaccacctgggaataagcgagaaggatttagctgaatttatcatcgat
ctggccgagaaacaaccaacgtttgagggattcaaagcggctctttttcagaatggagca
gacttcacagataccttcattggtaatctactcagacttattcaaactatgcgaatctca
ccgtccacaagtacagctcatcagtcagaggagggaaaagacaacctgaaggacaaatat
ccagctttatgtaaaccagatgatcccgtgtggagaatcccaccgtgccacccagagaaa
gatgacgagaaggtggcggcggcggccatgaaggagctggagatgctgatgccggacttc
tgtggagcgagcgctagtgacgggaaccagggcgctgccagaggccgagacgcagacaga
ccgaccggacgccggcgaagtcgctctcgctccagatcgagagatcgggacggagacgcg
aaccccgcgcgcaaaaggaaacgggtgtcacgctggagcgaccatccaccgagccctcgc
agagacgacggcggcggcggcagcagcagcaacaacaacgccgctaccaccaccaacaac
aacaacaacgccgccggcaacaacaagaaggacgagagagactctgaccgctggcgtgat
cgacttgtggatcggccgccggcggaagagcccgtcgtgggcgacgtctacaacggcaaa
atcagcagcctcatgcagttcggctgcttcgtgcagctggagggcctcaggaaacgcttc
gagggcctggtgcacatctccgaactacggaaagaaggacggatagccaacgtggctgac
gtggtcaccaaaggccagaaggtgaaggtcaaagtgctgtccttcaccgggaccaaagcc
agcctcagcatgaaggatgtggaccagcagacgggggaggacctgaaccccaaccggagg
aggaacctggaccccgcggtcggagacgaagccatgaggaacccggaccgcccggtcgag
gccagcatggcggacgcggaggagaacccgctggaacgcaagcggctcgccaagatcacc
gaccttgaaaaatgggaaatcaaacagatgatcgccgccaacgtgcttcctaaagaagag
ttcccagagtttgacgaggagacggggatccttcccaaaatcgatgacgatgaagatgaa
gagctggagatcgatctggtggaagaggagccgcctttcctgagggggcagaccaagttc
agcaccaacatgagtccagtcaagatcgtgaagaacccagacggctcgctctcccaggcc
gccatgatgcagagcgctctctccaaggagaggagggagctgaagcagacggcccgcgcg
gccgagatggactccatccctaccgggatccacaagaactggatcgacccgatgccggac
tatgaagggaggcagatcgccgccaacctgaggggcatcggcgccatgcccatagatctc
ccggcgtggaagcggtacgccttcggagggaaccaggtgtcgtacggccagaggaccgaa
ctctccatcctgcagcagagagagactctgcccattttcaagctcaaggatcagcttgtt
caggccgtccacgacaaccagatcctgattgtcgtgggagagacgggctccggcaagacc
acgcagatcacccagtacctggcggaggccggctacacctccagggggaagatcggctgc
acgcagcctcgtcgcgtggccgccatgtccgtggccaagagagtctccgaggagtacggc
tgccgtctgggacaagaggtgggttacaccatccggttcgaggactgcaccagcacggag
acggtgatcaagtacatgacgcacgggatgctgcagagggagtgtctgctggacgccgac
atgagccagtactcgctcatcatgctcgacgaggcccacgagaggacgatccacaccgac
gtgctcttcggacttctcaagaagacgatacagaagcgcaaagacatgaagctgatcgtg
tcctccgccacgctggacgccgtgaagttctcccagtatttctacgaggcgcccatcttc
accatcccggggaggacgtacccggtggaggttctctactgcaaagagcccgagacggac
tacctggacgccagcctcatcacggtcatgcagatccacctgatggagccgccgggtgac
atcctggtgtttctcacggggcaggaggagatcgacaccgcctgtgagatcctgtacgag
aggatgaagtcactggggccggacgtccccgagctgatcatcctgccggtttactccgcc
ctgcccagcgagatgcagaccaggatctttgacccggcgccgccgggcagcagaaaggtc
atcatcgccaccaacatcgccgagacgtcgctcaccatcgacggcatctactacgtggtg
gaccccggcttcgtgaagcagatcgtgtacaattccaagacgggcatcgaccagctggtg
gtgactcccatctcacaggcccaggctaagcagcgggcgggtcgagccggacgaacaggc
cccgggaagtgttaccggctctacacggagcgagcctacagggacgagatgctgaccacc
aacgtgcccgagatccagaggaccagcttggccagcacggtgctgtcgctaaaggcgatg
ggcatcaacgacctgctgtcctttgacttcatggacgctccccccatggagacgctgatc
atagccatggagcagctctacacgctcggctccctggatgacgaaggcctgctgacgcgg
ctggggaggaggatggccgagttccctctggagccgatgttgtgcaagatgctgatcatg
tccgtccacctgggctgcagcgaggagatgctcaccatcgtgtccatgctgtcggtgcag
aacatcttctacaggcccaaggacaaacagacccaggcggaccagaaaaagacaaagttc
ttccagccggagggcgaccacctgaccctgctggcggtctacaactcctggaagaacaac
aagttctccaacccctggtgtttcgagaacttcgtccaggcccgctcgctgaagagggct
caggacatccgcaagcagatgatgagcatcatggaccgacacaagctggacgtggtctcc
tgcgggcccgccaccatgcgggtccagaaagccatctgcagcggcttcttcaggaactcg
gccaggaagcacccgcacgacgggtaccgcaccctgatcgaccagcaggtggtgtacctc
cacccatccagcacgctcttcaaccgccagccggagtggctggtgtaccacgagctggtg
ctcaccaccaaggagtacatgcgcgaggtgacaaccatcgacccgcgctggctggtggag
ttcgcgccggccttctaccgcgtcggcgaccccacgcgcctcagccggcagaagcggatg
cagaaactggagccgctctacaaccgatacgaggagcccaacgcctggaggatctcgcgc
gcgttcaggcgccgctga
DBGET
integrated database retrieval system
