Clinocottus analis (woolly sculpin): 137789968
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Entry
137789968 CDS
T10471
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
137789968 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cana03400
]
137789968 (msh2)
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
137789968 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
137789968
NCBI-ProteinID:
XP_068439962
LinkDB
All DBs
Position
Unknown
AA seq
930 aa
AA seq
DB search
MAVQPKQNLSLDSAAEHGFLGFIHSMPEKPDTTFRIFDRNDFYTVHGKDAIFAAREVFKT
NGVIKYLGSGSGKLESVVLSKLNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHDWKIDYKA
SPGNLTQFEEILFGGGTGAADCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGEGNADGNKLREVVQRGGMLISDRKRAEFSSKDMVQDL
NRLLRAKRGETVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLATLDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRQSATLQDCFRVYQAVSHVPALVSAL
ERYSGSYQVLLEAVFLSPLRDLQNDFVKYQEMIETTLDMNQIDHHEFLVKASFDPALSEL
REKMDALEKSMQAVLNSAAKELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNGKLSSLNEEYTKNREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAQ
MDAVASFAVASVSAPVPYVRPRLLADGCRRMELQQARHPCMETDADTAFIPNDMSFAQGE
KNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSILARVGAGDSQVKG
VSTFMSEMLETAAILRSATQNSLIIIDELGRGTSTYDGFGLAWAISEHIASEISCFCLFA
THFHELTALAAQQPTVHNLHVTALTSHDTLTMLYRVKSGVCDQSFGIHVAEMACFPPSVV
AMAKEKAEELEEFQEPAGEKSEEEPEAKRRRTDKQVGENLIQDFLKKAKSLAAASLSEEE
VKAALKKMKQELVAKNNTYITDILSRGKTT
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcagaacctgtccttggacagtgccgctgagcatggctttctg
ggcttcattcactccatgccggagaaaccggacacgactttcagaatattcgaccgtaac
gacttctacaccgttcacgggaaggacgccattttcgcggcgagggaagttttcaagacc
aatggagtcatcaaatatttgggctcaggcagtggcaagctggagagtgtggtgctgagc
aagctgaacttcgaggcttttgtgaaagacttgctgctggtgaggcagtacagagtggaa
gtgtacaagaaccacagcaagagcagcaaggagcacgactggaagatcgactacaaggcc
tctccaggcaacttgacccagtttgaggagattctgttcggtggtggtaccggagcagcg
gactgtgcgggagttgtagccgtgcggttcgccaccggggccgatggacagcgagtggtc
ggcgtcggctatgtggacgcagcccagaggacgatgggagtgtgcgagttcccagacaac
gagatcttctccaacctcgagtcccttctggtccaaatcagccccaaagagtgcctcttg
gcccagggcgagggcaacgctgacggcaataaactacgcgaggtggtacagcggggcggc
atgctgatctcagacaggaagagggcggagtttagcagcaaggacatggtccaggatctc
aacaggctgctgagggccaagagaggagagaccgtggcgagcaacacgctgcctgagctg
gacaaacaggtggcgatgtcgtgcctggctgcggtggtgcgtttccttgaactgctctcg
gacgagtccaacttcaactccttcagcctcgccacgctggacctgggtcagtacatgaga
ctggacaacgctgccgtgagggctctgaacctcttccagggatcacctgacgacaccagc
ggagctcactcactggccggtctgttgaacaagtgccgcacgccgcagggccagcgtctc
gtcaaccagtggatcaaacagccgctcatggacaaaaccaaaatagaggaaaggctggac
ctggtggagagcttcgtttgcgactccgagctgcggcagacctgtcaggaggatttgctc
cggcggtttccggatcttcaccgtctggccaagaagttccaccgtcaatctgcaacgctg
caggactgcttccgcgtctaccaggccgtgagccacgtgcccgccctcgtctcggccctg
gaaagatactcaggtagctaccaggttctgttggaggccgtgttcctctctcctctcaga
gacctgcagaatgactttgtcaagtaccaggagatgattgaaaccacgctggacatgaac
cagattgaccaccacgagttcctggtgaaggcgtcgtttgatccagcgctgagtgagctg
agagaaaagatggacgctctggaaaagagcatgcaggcggtgctgaacagcgcagccaaa
gaacttggtctggacgccgggaagacggtgaagctggagtccaacgccatgctgggcttc
tacctgagggtcacctgcaaggaggagaagagtctgaggaacaacaagaaattcaccacg
ctggacgttcagaagaacggcgtgcgcttcaccaacggcaagctgagctctctgaacgag
gagtacaccaagaacagagaggagtacgaggaggcccagaacgccatcgtcaaagagatc
atcaacatcgcctcaggctacgtggatcctctccagacgctgagcgacgtgatcgctcag
atggacgcagtggcgagtttcgccgtggcgtccgtgtccgctccggtgccgtacgttcgg
ccccggctgctggcggacggctgccggcgcatggagctgcagcaggccagacacccctgc
atggagacggacgcagacaccgccttcatacccaacgacatgtccttcgcccagggagag
aagaacttctatattataacgggaccaaatatgggcggcaagtcaacgtttatccgtcag
gtgggtgtgattgccctgatggcgcagatagggtgctttgtgccatgcgaaaaggcggag
cttagcgtgattgacagtatcctggccagggtgggagcaggagacagccaggtcaaagga
gtctccaccttcatgtccgagatgctggagactgctgccatcctgcgctcggccacgcag
aactctctcatcataatcgacgagctcggcagaggcacgtccacgtacgacggcttcggt
ctggcctgggccatcagcgaacacatcgcctccgaaatcagctgcttctgtctgttcgcc
actcacttccacgagctgacggcgctggcggcgcagcagccgaccgtccacaacctgcac
gtcacggcactgacctcccacgacacactcactatgctctacagagtcaaatcaggtgtg
tgcgatcagagttttggaatccacgttgccgagatggcgtgcttcccgccatcggtggtg
gccatggcgaaggagaaggccgaggagctggaggagttccaggaacctgcaggggagaag
tcggaggaagagcccgaggcaaagagacgacggacagacaaacaagtgggggaaaacctg
atccaggacttcctgaaaaaggctaagtccctcgctgcggcctccctgagtgaagaagag
gtgaaggcggccctcaagaaaatgaagcaggagcttgtagccaaaaacaacacttatatc
acagacatcctttcacgtggaaaaacaacttga
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