Clinocottus analis (woolly sculpin): 137790004
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Entry
137790004 CDS
T10471
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
cana Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cana03037
]
137790004 (ift140)
Cilium and associated proteins [BR:
cana03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
137790004 (ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR19_1st
Beta-prop_EML
TPR_IFT80_172
Beta-prop_WDR90_POC16_2nd
TPR_COPA_B
Beta-prop_HPS5
TPR_GEMI5
ANAPC4_WD40
Clathrin
TPR_12
Beta-prop_WDR35_TULP_N
Beta-prop_CAF1B_HIR1
Consortin_N
TPR_2
RNase_HII
tRNA_int_end_N2
Motif
Other DBs
NCBI-GeneID:
137790004
NCBI-ProteinID:
XP_068440022
LinkDB
All DBs
Position
Unknown
AA seq
1447 aa
AA seq
DB search
MAVYFDHRIEAPESSNVPSQLTWHSALPVLAVASSSPSTGGNVDLYLQQGEYVNSCHLEQ
PHLPTVLRWHPIKPVLALGWENGQVVLLTHPSGDQTVLPSIHVACITLLEWSSSGSRLVT
GDQTGVLAVWKVDARGRLHGNHLVKHEYKKPLTCCIFRPASPGDDVAMLARASVSGDESA
LDMFSWKGAPLKMGPQEGLAFYVSTADGKVHSVDEHCKTSALLSVEGAIKKLLYLEKRDV
LAVVTETLMLSQYTLGPEGGAQEFMKVKLSSKTGQNVDIVWTKNGLLITATGEQVIRLWD
LDGDDNYVLSLNETLGFERGEIINCVAYCAAKEMLTAGTSHGRIAMWKMVVQAGGSRGDT
KAQWKLQTPTEIEGNVIQLQWGSSLNLLAANNSNTVRILCEHVMSAHFSQQVAAVQLTPT
QLNVTLFTTGVHLALQSDMHIKGVYVTKDSVTVWSGKQVTVYELSGTALRNTGSFPCDSH
VVAVHGENLYTVEPNRVQIRTPQGTVKQLLTFSKAEGNPVLLSVCQSYLVIGTDTAHIRV
FDLSRRDAKAHCSTKNLAEQIANLGALKSVKCNANGSQVSILISQVNGRPDHKVYFYDVE
MDTVTHFDFFVGRPSSGISQPEESERQQFQGTELGGRCPVSHFWDESEPRLFVCETVPIS
SESSSINLLDTTDVSVVTLFCTQEHGLLLQDCYPKPSGLQALLALDVPYYYFSCKPGESD
PAEISAPTSAPPQQTQPSSGPAAQIPHMVSRRALRDFVGLENCEKATRDAMLNFSFYLTI
GNMDEAFKSIKLIKSKAVWENMARMCVKTRQLDVARVCLGNMGNARAAKALKEAEVEPEP
EAQVAMLAIQLGMLEDAEKLYKCCQRHDLLNYFYQASGQWQQALETAENHDRIHLRTTYY
NYAKYLESMGDKTLALSYYEKSDTHRVEVPRMLQDDTTSLEIYVHKKKDKNIYKWWAQYL
ESQSDMDSALRFYESAQDYLSLVRVHCYMGSIQKASEIANDTGDRAASYHLARHYEGHDD
IKQAVHFYTRAQAYNNAIRLCKESGLDDQLMNLALLSNAEDMMEAACYYEEKGTHMDRAV
ALYHKAGYVSKALELAFATQQFSALQSIAEDLNEYSDPALLARCSDFFITHSQYEKAVEL
LVAAKKYHEALELCVTQSLTITEELAERMIVTDSKDLSEDARKELLERIADCCMRQGNYH
LATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVCRQKELFIMAANYLQSLDWRKNPEIL
KTIIGFYTKGRAPDLLAGFYEACAQVEIDDYQNYEKALDALTEAFKCLSKAKDTSTGQQE
VRLADLQHRLTLIKKFVHARRLYPEDPGEAVRICESLLEEPELDPAVRMGDAFGFLVEHH
CQQGNFQVAYRKLEELQKLLPTQNVRYYVSHASLESLQKEMGVSMDCGDSRHSVKEEDEV
EEDLTVS
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtattttgaccaccgtatcgaggcccctgaaagcagcaatgtgccctctcag
ttgacctggcactcagctcttcctgtactggctgtggcctcaagcagcccctccactgga
ggcaatgtagacctctacctgcagcagggagagtatgtcaatagctgccatttagaacaa
cctcacctgcccacagtgcttcgctggcatcccataaagcctgtgttggcactcggctgg
gagaatggacaggtagtgctactgacacacccctccggagatcaaactgtccttcctagc
atacatgtggcctgcatcacactgctggagtggagtagctctggcagccgattagtaact
ggcgatcagactggagtgctggcagtctggaaggtagatgcgagagggagacttcacgga
aaccatcttgtgaagcatgagtacaaaaaacctctaacttgctgcatcttcagaccggcc
tcgcctggagatgatgtggcaatgctagcccgggcatcagttagtggagatgagagtgct
ctggacatgttcagctggaagggagcacctctcaagatgggcccacaggagggacttgca
ttctacgtcagcactgcagatggtaaggtccacagtgtggatgagcattgtaagaccagc
gcactgctcagtgtggagggcgcaatcaagaaactgctctatcttgagaaaagagacgta
cttgctgtggtcacagagaccctgatgttgtcacagtacactcttggaccagagggagga
gcccaggaatttatgaaggtgaagttgagcagcaagactgggcagaatgtagacattgtc
tggacaaagaacggcctccttatcacagcaacaggggaacaggtcatcaggttatgggac
ctggacggagacgacaactatgttttgtccctcaacgagactctgggatttgagagagga
gaaattatcaactgtgttgcatattgtgcagcaaaagaaatgttgacagctggtaccagc
cacggccgcatagcaatgtggaagatggtggtgcaggcaggcggcagcagaggtgacacc
aaggcccagtggaagctacagacacccacagaaatagaaggaaatgtcattcagctacag
tggggctcgagcctgaatctgctggcggccaacaattcaaacactgtgcggattctgtgt
gagcatgtgatgtcagctcatttcagccagcaggtggcagcagtgcagctcaccccaacc
cagctcaatgtcactctgttcaccacaggagtgcaccttgctctgcagtccgacatgcat
atcaaaggagtttatgttactaaggattcagtgacagtgtggagtggcaagcaggtcact
gtgtatgagctctcagggacagctcttcgcaatacaggatcgtttccttgcgactctcat
gtcgtagctgtacatggtgagaacctctacacggtggaaccgaacagggttcagattcgt
acgccacagggcactgtgaagcaactgctgaccttttccaaagcagagggcaatccggta
ctacttagtgtgtgtcagtcttacctggtgatcggcacagacacagcacacatcagagta
tttgacctctctcgaagagatgccaaagctcactgcagtactaagaacctggctgaacag
attgctaatctgggagccctgaagtctgtcaagtgtaatgccaacggcagccaagtcagc
atcctaatctctcaggttaatgggcgaccggatcacaaagtgtacttttatgacgttgag
atggacactgtgacacactttgacttcttcgttggcagaccgtccagcggtatctcacag
ccagaggaaagtgaaaggcagcagtttcaggggacagagcttggtggtcgctgccctgtg
tctcacttctgggatgagagtgaacctcgtctttttgtttgtgagaccgtgccgatcagt
tctgaatcctcatcaattaatttattggatacgactgacgtgtcggtagtgacactcttc
tgtacgcaagagcatgggctcctcctacaggactgctaccctaaaccttcaggcctgcag
gcgctcctcgctctggatgtgccctactattatttcagctgcaagcctggtgagagcgat
ccagcagagatttccgccccgacatcagcacctccacagcagacccagccatcaagcggt
cctgctgcccagatcccccacatggtgtccaggcgagctctcagagactttgtgggcctg
gagaactgtgagaaagcaactcgcgacgccatgctcaacttcagcttttacctgaccatc
ggcaatatggacgaagccttcaagtctatcaagctcatcaagagtaaagcggtttgggaa
aacatggcacggatgtgtgtgaaaacccgccagctggatgtggcacgcgtgtgccttggg
aatatgggaaatgccagggcagcaaaagcactgaaggaggcggaggttgagccggagcca
gaagcccaagtggccatgttggccattcagctcggcatgctggaagatgcagaaaagttg
tacaagtgctgtcaacgccatgacctgctgaactatttctaccaggcgtctggccaatgg
cagcaagctttggaaacagcagagaaccacgatcgcatccatctgcgcaccacctattac
aattatgccaaatacctggagtccatgggcgacaagaccctggccctctcatattatgag
aaatccgacacacacagggtcgaagtgcccagaatgctccaggatgacacaacatctctt
gagatctacgtgcacaaaaagaaagacaaaaacatctataagtggtgggcccagtacctg
gagagccagtcagacatggattcagcgctgcgtttctatgaatctgctcaagattacctc
tctctggttcgagtccactgctacatggggagcattcagaaggcatctgagatagccaat
gacacaggcgacagggcagcgtcataccacttggctagacactatgagggccatgatgat
atcaaacaggctgtccacttctacacacgagcccaggcctacaacaacgccatacgactt
tgtaaggagtctggtctggatgaccagctgatgaacctggctctgctcagtaacgcagag
gacatgatggaggccgcctgctactacgaggagaaaggcacccacatggaccgagctgtc
gccctctatcacaaggctggttacgtttccaaagctttggagttggccttcgccactcag
cagttctctgctcttcaatcgatcgctgaggatctgaacgagtactcggacccagccctc
ctggcacgctgctccgacttcttcatcactcattcccagtatgaaaaggcagtggagtta
ctggtagcagccaagaagtaccatgaggccctggagttgtgtgtgacccagagcttgacc
atcacagaggagctggcagagagaatgattgtaactgattcgaaagacttgtctgaagat
gcccgaaaggagctgctggagaggatcgcggactgctgcatgcgtcagggcaattaccac
ctggccaccaagaaatacacacaggcgggcaacaagctgaaggccatgagggcactcctc
aagtctggcgacaccgagaaaatagttttcttcgccggtgtttgtcgtcagaaggagctt
ttcatcatggccgccaactacctgcagtctctggactggcgcaaaaatccagagatcttg
aagacaatcattggtttctacactaaaggccgggcaccagacctgctggctggcttctat
gaagcctgtgcacaggtggagattgatgattaccagaactatgaaaaggctctggatgct
ttgactgaggcgttcaagtgcctctccaaagcaaaggacacttccactggacaacaggaa
gtaaggctcgctgacctgcagcacagattaacgctgatcaagaagtttgtccacgctcgc
cggttgtacccggaggatcctggtgaggctgtgcggatatgtgaatccttgctggaggag
ccggagttggaccctgctgtcaggatgggggatgcatttggttttctggtggagcaccac
tgtcagcaaggcaacttccaagtggcctaccgtaaactggaggagctccagaagcttctg
ccaacccagaacgtccggtactatgtcagccacgccagccttgagtccctgcaaaaagaa
atgggtgtatccatggattgtggtgacagcaggcacagtgtgaaggaggaggacgaagtg
gaggaggacttaactgtatcttaa
DBGET
integrated database retrieval system
